View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_33 (Length: 241)
Name: NF10838_low_33
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 34439341 - 34439567
Alignment:
| Q |
1 |
aatcataaccatagtatgaaaagcttccaaagcccaagcaata--tgtgagaatgaagtgtttcagctgccattttccaaactcaccacagtatttttca |
98 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34439341 |
aatcataaccatagtatgaaaagcttccaacgcccaagcaagacatgtgagaatgaagtgtttcagctgccattttccaaactcaccacagtatttctca |
34439440 |
T |
|
| Q |
99 |
agcatctcatcgatgcagatcttttccgttcccacctttttggatggcggtgacatgatcggtgagtggagatcatcggaaaatgaggacaatgtggccg |
198 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34439441 |
agcatctcatcgatgcagatcttttccgttcccgcctttttggacggcggtgacatgatcggtgagtggagatcatcggaaaatgaggacaatgtggccg |
34439540 |
T |
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| Q |
199 |
ccatcggtaatattctgtgcttgaaag |
225 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34439541 |
ccatcggtaatattctgtgcttgaaag |
34439567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 34422483 - 34422608
Alignment:
| Q |
1 |
aatcataaccatagtatgaaaagcttccaaagcccaagcaata--tgtgagaatgaagtgtttcagctgccattttccaaactcaccacagtatttttca |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34422483 |
aatcataaccatagtatgaaaagcttccaacgcccaagcaagacttgtgagaatgaagtgtttcagctgccattttccaaactcaccacagtatttctca |
34422582 |
T |
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| Q |
99 |
agcatctcatcgatgcagatcttttc |
124 |
Q |
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|||||||||||||||||||| ||||| |
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| T |
34422583 |
agcatctcatcgatgcagattttttc |
34422608 |
T |
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