View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10838_low_34 (Length: 241)
Name: NF10838_low_34
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_34 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 29612397 - 29612621
Alignment:
| Q |
1 |
ctagttggccttgtgtcaagtgtatttggcctattgtgttatcctcagagcccttctttcaatcgtttaattggaagatggaacattttcaaaatctctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
29612397 |
ctagttggccttgtgtcaagtgtatttggcctattgtgttatgctcagagcccttctttcaatcgtttaattggaagatggaacattgtcaagttctctc |
29612496 |
T |
|
| Q |
101 |
tgtatgtggtgttttccttggctatctttagcaccatattgtatgtaaagcagctctcaccctccacaaaatatgctcaactaaaaacttacataagctt |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29612497 |
tgtatggagtgttttccttggctatctttaccaccatattgtttgtaaagcagttctcaccatccacaaaatatgctcaactaaaaacttacataagctt |
29612596 |
T |
|
| Q |
201 |
tgcagttttgctgatcatctcagtg |
225 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
29612597 |
tgcagttttgatgatcatctcagtg |
29612621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 29524609 - 29524832
Alignment:
| Q |
2 |
tagttggccttgtgtcaagtgtatttggcctattgtgttatcctcagagcccttctttcaatcgtttaattggaagatggaacattttcaaaatctctct |
101 |
Q |
| |
|
||||||| |||||||||||||| | |||||||| ||| || ||||||||| ||||||||||||||| ||||||| |||||||| | |||| ||| ||| |
|
|
| T |
29524609 |
tagttggaattgtgtcaagtgtagtaggcctattatgtaatgctcagagccattctttcaatcgtttcattggaaaatggaacactctcaagttctttct |
29524708 |
T |
|
| Q |
102 |
gtatgtggtgttttccttggctatctttagcaccatattgtatgtaaagcagctctcaccctccacaaaatatgctcaactaaaaacttacataagcttt |
201 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||| |||| |||||||| | ||||| | |||||| ||||| ||| ||||| | |||| |||| |
|
|
| T |
29524709 |
gtatggggtgttttccttggttatctttactaccatgttgtttgtaaagccgttctcaacatccacacgatatggtcatataaaaccctacacgggcttc |
29524808 |
T |
|
| Q |
202 |
gcagttttgctgatcatctcagtg |
225 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
29524809 |
acagttttgatgatcatctcagtg |
29524832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 29529070 - 29528989
Alignment:
| Q |
2 |
tagttggccttgtgtcaagtgtatttggcctattgtgttatcctcagagcccttctttcaatcgtttaattggaagatggaa |
83 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||| || |||||| ||| |||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
29529070 |
tagttgggcttatgtcaagtgtagttggcctgttatgttatgctctgagcccttctttcaatcgattaattggaaggtggaa |
29528989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 29475394 - 29475254
Alignment:
| Q |
2 |
tagttggccttgtgtcaagtgtatttggcctattgtgttatcctcagagcccttctttcaatcgtttaattggaagatggaacattttcaaaatctctct |
101 |
Q |
| |
|
||||||||||| |||||||| || | || || | |||||| ||| |||||||||||||||||| |||||||||| || ||| |||| | |||| ||| |
|
|
| T |
29475394 |
tagttggccttatgtcaagtatagtcggtctggtttgttatgctctgagcccttctttcaatcgattaattggaaaattgaaagctttccagatctttct |
29475295 |
T |
|
| Q |
102 |
gtatgtggtgttttccttggctatctttagcaccatattgt |
142 |
Q |
| |
|
|||| |||||| ||||| |||||||| | ||||||||||| |
|
|
| T |
29475294 |
ttatggggtgttgtccttagctatcttcaccaccatattgt |
29475254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University