View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_37 (Length: 240)
Name: NF10838_low_37
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 10129990 - 10130146
Alignment:
| Q |
17 |
aatcaaggtatagtacttagctagatcacaacaatgcatgttttattttagattaaaa-aacatcacagaaatgccttttctcttttaaaagaccagaca |
115 |
Q |
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| T |
10129990 |
aatcaaggtatagtacttagctagatcacaacaatgcatgttttattttagattaaaaaaacatcacagaaatgccttttctcttttaaaagaccagata |
10130089 |
T |
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| Q |
116 |
caccaccaaccttcaccaattaatagctggtcaaaggtatcaataattcaattatcaa |
173 |
Q |
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| T |
10130090 |
caccaccaaccttcaccaa-taatagctggtcaaaagtgtcaataattcaattatcaa |
10130146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 10130181 - 10130221
Alignment:
| Q |
181 |
ggtatgaaacattcctaaacaaattatatgatctggacatat |
222 |
Q |
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| T |
10130181 |
ggtatgaaacattcctaaac-aattatatgatctggacatat |
10130221 |
T |
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