View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_38 (Length: 240)
Name: NF10838_low_38
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 14220751 - 14220969
Alignment:
| Q |
15 |
aaacacaacaacttaagtaaggtctttttgttgcttctaatgctaaaccaagtttcatcaactgtggtggtgttatatcgcagaaacttccacggtatgc |
114 |
Q |
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| T |
14220751 |
aaacacaacaacttaagtaaggtctttttgttgcttctaatgctaaaccaagtttcatcaactgtggtggtgttatatcgcagaaacttccacggtatgc |
14220850 |
T |
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| Q |
115 |
atatattatgctgcctggattttgagaatcacgtcacttcaaatgctgatattcatcaatttaactcatgcctatttacatacattatgtgagtcattgc |
214 |
Q |
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| T |
14220851 |
atatattatgctgcctggattttgagaatcacgtcacttctaatgctgatattcatcaatttaactcatgcctatttacatacattatgtgagtcattgc |
14220950 |
T |
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| Q |
215 |
ttcccattaccctttgctt |
233 |
Q |
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| T |
14220951 |
ttcccattacactttgctt |
14220969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 41517994 - 41517852
Alignment:
| Q |
33 |
aaggtctttttgttgcttctaatgctaaaccaagtttcatcaactgtggtggtgttatatcgcagaaacttccacggtatgcatatattatgctgcctgg |
132 |
Q |
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| T |
41517994 |
aaggtatttttgttgcttctaatgctaaaccaagttctatcaactgtaatggtgttatattgcataaacttccaaggcatgcatagagaacactcccttg |
41517895 |
T |
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| Q |
133 |
attttgagaatcacgtcacttcaaatgctgatattcatcaatt |
175 |
Q |
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| T |
41517894 |
tttctgagaatcaagccacttcaaatgctcccattcatcaatt |
41517852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 41536971 - 41536904
Alignment:
| Q |
35 |
ggtctttttgttgcttctaatgctaaaccaagtttcatcaactgtggtggtgttatatcgcagaaact |
102 |
Q |
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| T |
41536971 |
ggtctttttgttgcttctaatgctaaaccaagctctatcaactgtggtggtgttaaattgcataaact |
41536904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 8136710 - 8136797
Alignment:
| Q |
33 |
aaggtctttttgttgcttctaatgctaaaccaagtttcatcaactgtggtggtgttatatcgcagaaacttccacggtatgcatatat |
120 |
Q |
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| T |
8136710 |
aaggtttttttgttgcttctaatgctaaccctagctctatcaactgtagtgatgttaaattacataaacttccaaggcatgcatatat |
8136797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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