View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10838_low_4 (Length: 415)
Name: NF10838_low_4
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 39 - 400
Target Start/End: Original strand, 6094667 - 6095028
Alignment:
| Q |
39 |
tcccatttttctccaataggttgcaaatgtattggccactttagtacaaatatttaaaagccaaacatcaaccattcatttctagattttgtttaatccc |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6094667 |
tcccatttttctccaataggttgcaaatgtattggccactttagtacaaacatttaaaagccaaacatcaaccattcatttctagattttgtttaatccc |
6094766 |
T |
|
| Q |
139 |
tcnnnnnnnnnnnnntctggataaatgtattcttaaacaaaatcaaaatatataaatgtattggttggattgaacaaaattgaacacattttctataaaa |
238 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6094767 |
tcaaaaaaaaaatattctagataaatgtattcttaaacaaaatcaaagcatataaatgtactggttgggttgaacaaaattgaacacattttctataaaa |
6094866 |
T |
|
| Q |
239 |
tcaacacattaaccataatcataaaaataaattaacattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgtttttgctgcaatt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
6094867 |
acaacacattaaccataatcataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttcattttcacgtttctgctgcaatt |
6094966 |
T |
|
| Q |
339 |
ggcgttgaaatgattgattctcttcagacattcttatcttcctcgcactaacttgagactgc |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6094967 |
ggcgttgaaaagattgattctcttcagacattcttatcttcctcgcactaacttgagactgc |
6095028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 44188485 - 44188864
Alignment:
| Q |
1 |
attttgcttggatttgctcctttgattgtgacctataatcccatttttctccaataggttgcaaatgtattggccactttagtacaaatatttaaaagcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
44188485 |
attttgcttggatttgctcctttgattgtgaactataatcccatttttctccaataggctgcaaatgtatttgccactttagtacaaatatttaaa-gcc |
44188583 |
T |
|
| Q |
101 |
aaacatcaaccattcatttctagattttgtttaatccctcnnnnnnnnnnnnntctggataaatgtattcttaaacaaaatcaaaatatataaatgtatt |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||||||||| ||| ||||||| | |
|
|
| T |
44188584 |
aaacatcaaccattcatatctagattttgtttaatccat-aaaaaaaaaatattctagataaatgtattcttaaacaaaatcaaagcatacaaatgtact |
44188682 |
T |
|
| Q |
201 |
ggttggattgaacaaaattgaacacattttctataaaatcaacacattaaccataatcataaaaataaattaacattgaacaaatacttacagcagcttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44188683 |
ggttggattgaacaaaattgaacacattttctataaaaacaacacattaaccataatcataaaaataaattaatattgaacaaatacttacagcagcttg |
44188782 |
T |
|
| Q |
301 |
taacttgtcaagttccttttcacgtttttgctgcaattggcgttgaaatgattgattctcttcagacattcttatcttcctc |
382 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
44188783 |
taacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattcattctcttcagacattcttatcttcctc |
44188864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 158 - 382
Target Start/End: Original strand, 44162520 - 44162744
Alignment:
| Q |
158 |
gataaatgtattcttaaacaaaatcaaaatatataaatgtattggttggattgaacaaaattgaacacattttctataaaatcaacacattaaccataat |
257 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44162520 |
gataaatgtattcttaaacaaaatcaaagcatacaaatgtactggttggattgaacaaaattgaacacattttctataaaaacaacacattaaccataat |
44162619 |
T |
|
| Q |
258 |
cataaaaataaattaacattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgtttttgctgcaattggcgttgaaatgattgatt |
357 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||| |
|
|
| T |
44162620 |
cataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattcatt |
44162719 |
T |
|
| Q |
358 |
ctcttcagacattcttatcttcctc |
382 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
44162720 |
ctcttcagacattcttatcttcctc |
44162744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 32727612 - 32727992
Alignment:
| Q |
1 |
attttgcttggatttgctcctttgattgtgacctataatcccatttttctccaataggttgcaaatgtattggccactttagtacaaatatttaaaagcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32727612 |
attttgcttggatttgctcctttgattgtgaactataatcccgtttttctccaataggctgcaaatgtatttgccactttagtacaaatatttaaaagcc |
32727711 |
T |
|
| Q |
101 |
aaacatcaaccattcatttctagattttgtttaatccctcnnnnnnnnnnnnntctggataaatgtattcttaaacaaaatcaaaatatataaatgtatt |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| | ||| ||| |||||||||||||||||||||||| ||| ||||||| | |
|
|
| T |
32727712 |
aaacatcaaccattcatttttagattttgtttaatccat-aacaaaaaaatattctagatgaatgtattcttaaacaaaatcaaagcatacaaatgtact |
32727810 |
T |
|
| Q |
201 |
ggttggattgaacaaaattgaacacattttctataaaatcaacacattaaccataatcataaaaataaattaacattgaacaaatacttacagcagcttg |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32727811 |
ggttggattgaacaaaattgaatacattttctataaaaacaacacattaaccacaatcataaaaataaattaatattgaacaaatacttacagcagcttg |
32727910 |
T |
|
| Q |
301 |
taacttgtcaagttccttttcacgtttttgctgcaattggcgttgaaatgattgattctcttcagacattcttatcttcctc |
382 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
32727911 |
taacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattcattctcttcagacattcttatcttcctc |
32727992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 213 - 382
Target Start/End: Original strand, 32718839 - 32719008
Alignment:
| Q |
213 |
caaaattgaacacattttctataaaatcaacacattaaccataatcataaaaataaattaacattgaacaaatacttacagcagcttgtaacttgtcaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32718839 |
caaaattgaacacattttctataaaaacaacacattaaccacaatcataaaaataaattaatattgaataaatacttacagcagcttgtaacttgtcaag |
32718938 |
T |
|
| Q |
313 |
ttccttttcacgtttttgctgcaattggcgttgaaatgattgattctcttcagacattcttatcttcctc |
382 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
32718939 |
ttccttttcacgattctgctgcaattggcgttgaaaagattcattctcttcagacattcttatcttcctc |
32719008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 173 - 396
Target Start/End: Complemental strand, 43095497 - 43095277
Alignment:
| Q |
173 |
aaacaaaatcaaaatatataaatgtattggttggattgaacaaaattgaacacattttctataaaatcaacacattaaccataatcataaaaataaatta |
272 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||||||||||| ||| ||||| |||||| ||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
43095497 |
aaacaaaatcaaagcatataaatgtattgattggactgaacaaaattaaacgcattt---ataaaaacaaaacactaagcataatcataaaaataaatta |
43095401 |
T |
|
| Q |
273 |
acattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgtttttgctgcaattggcgttgaaatgattgattctcttcagacattct |
372 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
43095400 |
atattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgtttctgctgcaattggcgttgaaaagattgattctcctcagacattct |
43095301 |
T |
|
| Q |
373 |
tatcttcctcgcactaacttgaga |
396 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
43095300 |
gattttcctcgcactaacttgaga |
43095277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 43095594 - 43095515
Alignment:
| Q |
4 |
ttgcttggatttgctcctttgattgtgacctataatcccatttttctccaataggttgcaaatgtattggccactttagt |
83 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43095594 |
ttgcttggatttgctcctttgattgtgaactataatcccatttttctccaataggctgcaaatgtattggccactttagt |
43095515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University