View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_41 (Length: 232)
Name: NF10838_low_41
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 44314907 - 44315108
Alignment:
| Q |
14 |
aagaagggttgcgcgtatacttggtatgctcccacaaggtgaattacgatagcagcattagcaatatcaatgagccaatatggattaaaaattccagtga |
113 |
Q |
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| T |
44314907 |
aagaagggttgcgcgtatacttggtatgctcccacaaggtgaattacgatagcagcattagcaatatcaatgagccaatatggattaaaaattccagtga |
44315006 |
T |
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| Q |
114 |
gtaagttccctggtgctgtgtctccaaatgctgcataacccatgcagccacaaagcatataaaatgcagttgtcacgcctatacttatctttgtggcttg |
213 |
Q |
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| T |
44315007 |
gtaagttccctggtgctgtgtctccaaatgctgcataacccatgcagccacaaagcatataaaatgcagttgtcacgcctatacttatctttgtggcttg |
44315106 |
T |
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| Q |
214 |
ct |
215 |
Q |
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|| |
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| T |
44315107 |
ct |
44315108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 44305298 - 44305455
Alignment:
| Q |
29 |
tatacttggtatgctcccacaaggtgaattacgatagcagcattagcaatatcaatgagccaatatggattaaaaat------tccagtgagtaagttcc |
122 |
Q |
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| T |
44305298 |
tatacttggtatgctcccacaaggtggattacgacggcagcattcgcaaaatcgatgagccaggctggattgtacatactaaatccagtgagcaagttcc |
44305397 |
T |
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| Q |
123 |
ctggtgctgtgtctccaaatgctgcataacccatgcagccacaaagcatataaaatgc |
180 |
Q |
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| T |
44305398 |
ctggtgcttgttctccgaatgcagcatagcccatgcagccacaaagcaaataaaatgc |
44305455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 44322375 - 44322428
Alignment:
| Q |
19 |
gggttgcgcgtatacttggtatgctcccacaaggtgaattacgatagcagcatt |
72 |
Q |
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| T |
44322375 |
gggttgggcatacacttggtatgctccaaaaaggtgaataacgatagcagcatt |
44322428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 51716253 - 51716294
Alignment:
| Q |
136 |
tccaaatgctgcataacccatgcagccacaaagcatataaaa |
177 |
Q |
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| T |
51716253 |
tccaaatgctgcataacctaagcagccacatagcatataaaa |
51716294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 6250835 - 6250791
Alignment:
| Q |
134 |
tctccaaatgctgcataacccatgcagccacaaagcatataaaat |
178 |
Q |
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| T |
6250835 |
tctccaaatgctgcatatcccatgcagccacaaagcatgtaaaat |
6250791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 39427397 - 39427467
Alignment:
| Q |
134 |
tctccaaatgctgcataacccatgcagccacaaagcatataaaatgcagttgtcacgcctatacttatctt |
204 |
Q |
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| T |
39427397 |
tctccaaatgcagcatatcccatgcagccacaaagcatgtaaaatactgtggtcactgcaatacttatctt |
39427467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 39427287 - 39427356
Alignment:
| Q |
30 |
atacttggtatgctcccacaaggtgaattacgatagcagcattagcaatatcaatgagccaatatggatt |
99 |
Q |
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| T |
39427287 |
atacttgatatgctcccacaaggtgaactactatagctgcatttgctatgtctattagccaatatggatt |
39427356 |
T |
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