View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_44 (Length: 228)
Name: NF10838_low_44
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 42760756 - 42760559
Alignment:
| Q |
16 |
taggagactaaacttcaagaaaaagggtgaaaaaagagagttcaaggttacattaaccttgaagaaaggaactacgtataagactgattacgtctttgga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42760756 |
taggagactaaacttcaagaaaaagggtgaaaaaagagagttcaaggttacattaaccttgaagaaaggaactacgtataagactgattacgtctttgga |
42760657 |
T |
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| Q |
116 |
aaattggtttggaacgatggaaaacatcaagttgggactcctattgcaataaagtatccacattaggggtatttatttaggttactgctgcattttct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42760656 |
aaattggtttggaacgatggaaaacatcaagttgggactcctattgcaataaagtatccacattagtggtatttatttaggttactgctgcattttct |
42760559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 42751294 - 42751097
Alignment:
| Q |
16 |
taggagactaaacttcaagaaaaagggtgaaaaaagagagttcaaggttacattaaccttgaagaaaggaactacgtataagactgattacgtctttgga |
115 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42751294 |
taggagactaaattttaagaaaaagggtgaaaaaagagagttcaaggttacattaaccttgaagaaaggaactacgtataagactgattacgtctttgga |
42751195 |
T |
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| Q |
116 |
aaattggtttggaacgatggaaaacatcaagttgggactcctattgcaataaagtatccacattaggggtatttatttaggttactgctgcattttct |
213 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42751194 |
aaattggtttggaccgatggaaaacatcaagttgggactcctattgcaataaagtatccacattagtggtatttatttaggttactgctgcattttct |
42751097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 42741935 - 42741770
Alignment:
| Q |
16 |
taggagactaaacttcaagaaaaagggtgaaaaaagagagttcaaggttacattaaccttgaagaaaggaactacgtataagactgattacgtctttgga |
115 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741935 |
taggagactaaatttcaagaaaaagggtgaaaaaagagagttcaaggttacattaaccttgaagaaaggaactacgtataagactgattacgtctttgga |
42741836 |
T |
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| Q |
116 |
aaattggtttggaacgatggaaaacatcaagttgggactcctattgcaataaagtatccacattag |
181 |
Q |
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||||||||||||| |||||| |||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
42741835 |
aaattggtttggaccgatgggaaacatcaagttgggattcctatttcaataaagtatccacattag |
42741770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 23042568 - 23042761
Alignment:
| Q |
20 |
agactaaacttcaagaaaaagggtgaaaaaagagagttcaaggttacattaaccttgaagaaaggaactacgtataagactgattacgtctttggaaaat |
119 |
Q |
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|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23042568 |
agactaaattttaagaaaaatggtgaaaaaagagagttcaaggttacattaaccttgaagaaaggaactacatataagactgattacgtctttggaaaat |
23042667 |
T |
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| Q |
120 |
tggtttggaacgatggaaaacatcaagttgggactcctattgcaataaagtatccacattaggggtatttatttaggttactgctgcattttct |
213 |
Q |
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|| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23042668 |
tgatttggaccgatggaaaacatcaagttgcgactcctattgcaataaagtatccacattagtggtatttatttaggttactgctgcattttct |
23042761 |
T |
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