View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_49 (Length: 201)
Name: NF10838_low_49
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 13347245 - 13347418
Alignment:
| Q |
14 |
cataggaattgtagtattcaatcaacaataaaactttaagcttttatttttcttaaaa-caagaccaaattcataaaaacggcacgtataatatctagtt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| ||| |||||||||| |
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| T |
13347245 |
cataggaattgtagtattcaatcaacaataaaactttaagcttttatttttcttaaaaacaagaccaaattcataacaaaa-cacatatgatatctagtt |
13347343 |
T |
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| Q |
113 |
tcacatcatctcaatctggctaccacgcttattcttcgtggtggccgcaacttcaacatcttcatacaaagaact |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13347344 |
tcacatcatctcaatctggctaccacgcttattcttcgtggtggccgcaacttcaacatcttcatacaaagaact |
13347418 |
T |
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