View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_5 (Length: 400)
Name: NF10838_low_5
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 4 - 377
Target Start/End: Original strand, 25839382 - 25839755
Alignment:
| Q |
4 |
ttatatttatactctatacaaatacggagaactaaaaatcctttgtgagaagnnnnnnnnnccatgttaatgagaatatgagttcggtttatggatggag |
103 |
Q |
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| T |
25839382 |
ttatatttatactttatataaatacggagaactaaaaatcctttgtgagaaagaaaaaaaaccatgttaatgagaatatgagttcggtttatggatggag |
25839481 |
T |
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| Q |
104 |
caatttttaatcagattttacttatatctaggttgaattccgaattattagagatctttctttcgataacaccatggttaacaaaaatacatttggaaat |
203 |
Q |
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| T |
25839482 |
caatttttaatcagattttacttatatctaggttgaattccgaattattagagatctttctttcgataaccccatggttaacaaaaatacatttggaaat |
25839581 |
T |
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| Q |
204 |
gatttgattgagaattaatgtaccaaattgatgaaaatggttcttatctttgatgtaattatagttaattttctttaaatttatacattttctttttgca |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25839582 |
gatttgattgagaattaatgtaccaaattgatgaaaatggttcttatctttgatgtaattatagttaattttctttaaatttatacattttctttttgca |
25839681 |
T |
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| Q |
304 |
aacatgttattactatcaagtgtctattcgttttgtacttctgtattaatctcatcaaagaatttatttggacc |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25839682 |
aacatgttattactatcaagtgtctattcgttttgtacttctgtattaatctcatcaaagaatttatttggacc |
25839755 |
T |
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