View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_6 (Length: 397)
Name: NF10838_low_6
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 30256043 - 30255662
Alignment:
| Q |
1 |
tatttattataagaaggagagaatctaatgcatgaatgcagtaatatcagagttaccatcaaaatattttggcacactgtgagagttgagaggtcatgga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30256043 |
tatttattataagaaggagagaatctaatgcatgaatgcagtaatatcagagttaccatcaaaatattttggcacactgtgagagttgagaggtcatgga |
30255944 |
T |
|
| Q |
101 |
tttgagttgaaatgtattgcatgattgctttgcttttgtttatgcatattcatgcatgcttgtatattatagacatagctaacctaaactctatcctaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30255943 |
tttgagttgaaatgtattgcatgattgctttgcttttgtttatgcatattcatgcatgcttgtatattatagacatagctaacctaaactctatcctaaa |
30255844 |
T |
|
| Q |
201 |
catagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatatatactatctaattagctataagattaaaaactaattaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30255843 |
catagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatgtatactatctaattagctataagattaaaaactaattaa |
30255744 |
T |
|
| Q |
301 |
agtagatgaaaaccacatatataattgagctaatgcactaggtaggaaaaataatattttcaaatgtaaatcacttatagct |
382 |
Q |
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| T |
30255743 |
agtagatgaaaaccacatatataattgagctaatgcactaggtaggaaaaataatattttcaaatgtaaatcacttatagct |
30255662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 45241910 - 45241746
Alignment:
| Q |
14 |
aaggagagaatctaatgcatgaatgcagtaatatcagagttaccatcaaaatattttggcacactgtgagagttgagaggtcatggatttgagttgaaat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
45241910 |
aaggagagaatctaatgcatgaatgcagtaatatcagagtaaccatcaaagtattttggcacaatgtgagagttcagaggacatggatttgagttgaaat |
45241811 |
T |
|
| Q |
114 |
gtattgcatgattgctttgcttttgtttatgcatattcatgcatgcttgtatattatagacatag |
178 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||| |
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| T |
45241810 |
gtattgcatgattgttttgctttttcttatgcatatgcatgcatgtttgtatattatagacatag |
45241746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 42317898 - 42318062
Alignment:
| Q |
14 |
aaggagagaatctaatgcatgaatgcagtaatatcagagttaccatcaaaatattttggcacactgtgagagttgagaggtcatggatttgagttgaaat |
113 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
42317898 |
aaggagagaatttaatgcatgaatgcagtaatatcagagtaaccatcaaagtattttggcacaatgtgagagttcagaggacatggatttgagttgaaat |
42317997 |
T |
|
| Q |
114 |
gtattgcatgattgctttgcttttgtttatgcatattcatgcatgcttgtatattatagacatag |
178 |
Q |
| |
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||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||||| |
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| T |
42317998 |
gtattgcatgattattttgcttttgcttatgcatatgcatgcatgtttgtatattatagacatag |
42318062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 45241751 - 45241643
Alignment:
| Q |
200 |
acatagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatatatactatctaattagctataagattaaaaactaatta |
299 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||||||||||||| || ||| || ||||||||||||||||||||| ||||| ||||| |
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| T |
45241751 |
acatagtttctgttttggtgattaggagtgaaatatttttcattgttctttacagtttaatgta---tatctaattagctataagatt-aaaacaaatta |
45241656 |
T |
|
| Q |
300 |
aagtagatgaaaa |
312 |
Q |
| |
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||||| ||||||| |
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| T |
45241655 |
aagtatatgaaaa |
45241643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 42318057 - 42318165
Alignment:
| Q |
200 |
acatagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatatatactatctaattagctataagattaaaaactaatta |
299 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||||||||||||| | ||| || || |||||||||||||||||| ||||| ||||| |
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| T |
42318057 |
acatagtttctgttttggtgattaggagtgaaatatttttcattgttctttacagcttaatgta---taactaattagctataagatt-aaaacaaatta |
42318152 |
T |
|
| Q |
300 |
aagtagatgaaaa |
312 |
Q |
| |
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||||| ||||||| |
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| T |
42318153 |
aagtatatgaaaa |
42318165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 31663218 - 31663054
Alignment:
| Q |
14 |
aaggagagaatctaatgcatgaatgcagtaatatcagagttaccatcaaaatattttggcacactgtgagagttgagaggtcatggatttgagttgaaat |
113 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||| |
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|
| T |
31663218 |
aaggagagaatttaatgcatgaatgcagtaatatcagagtaaccatcaaagtattttggcacaatgtgagagttcagaggacatggatttgagttgaaat |
31663119 |
T |
|
| Q |
114 |
gtattgcatgattgctttgcttttgtttatgcatattcatgcatgcttgtatattatagacatag |
178 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||||| |
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| T |
31663118 |
gtattgcatgattattttgcttttgcttatgcatatgcatgcatgtttgtatattatagacatag |
31663054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 304
Target Start/End: Complemental strand, 31663059 - 31662959
Alignment:
| Q |
200 |
acatagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatatatactatctaattagctataagattaaaaactaatta |
299 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||||||||||||| | ||| || || |||||||||||||||||| ||||| ||||| |
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| T |
31663059 |
acatagtttctgttttggtgattaggagtgaaatatttttcattgttctttacagcttaatgta---taactaattagctataagatt-aaaacaaatta |
31662964 |
T |
|
| Q |
300 |
aagta |
304 |
Q |
| |
|
||||| |
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|
| T |
31662963 |
aagta |
31662959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 6671293 - 6671457
Alignment:
| Q |
14 |
aaggagagaatctaatgcatgaatgcagtaatatcagagttaccatcaaaatattttggcacactgtgagagttgagaggtcatggatttgagttgaaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| || ||||||| ||||| ||||||||||||||||||| |
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| T |
6671293 |
aaggagagaatctaatgcatgaatgcagtaatatcagagtaaccatcaaagtattttggcacaatgagagagttcagaggacatggatttgagttgaaat |
6671392 |
T |
|
| Q |
114 |
gtattgcatgattgctttgcttttgtttatgcatattcatgcatgcttgtatattatagacatag |
178 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
6671393 |
gtattgcatgattcttttgcttttgcttatgcatatgcatgcatgtttgtatattatagacatag |
6671457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 6671452 - 6671560
Alignment:
| Q |
200 |
acatagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatatatactatctaattagctataagattaaaaactaatta |
299 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||||||||||||| || ||| || ||||||||||||||||||||| |||| ||||| |
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|
| T |
6671452 |
acatagtttctgttttggtgattaggagtgaaatatttttcattgttctttacagtttaatgta---tatctaattagctataagatt-aaaataaatta |
6671547 |
T |
|
| Q |
300 |
aagtagatgaaaa |
312 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
6671548 |
aagtatatgaaaa |
6671560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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