View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10838_low_7 (Length: 374)
Name: NF10838_low_7
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 50442999 - 50442646
Alignment:
| Q |
7 |
ttctcttccttcatcaccttcttttttcaccataagtaagtaagccttgtacatattatgattattacgctctttctaccatatgcataaagcttacatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50442999 |
ttctcttccttcatcaccttcttttttcaccataagtaagtaagccttgtacatattatgattattacgctctttctaccatatgcataaagcttacatt |
50442900 |
T |
|
| Q |
107 |
attattattggcttgcagacggacacgtctcttagcnnnnnnnattgttctaacgtgtataaatattttacaatgtttctttgtgtaaacactactattg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
50442899 |
attattattggcttgcagacggacacgtctcttagctttttttattgttctaacgtgtataaatattttacaatgtttctttgtgtaaacattattattg |
50442800 |
T |
|
| Q |
207 |
ctagcatgcagattgatacattgtcttctttttatttgtgtcaacgtgcgtttagactttactacatttctttttataaatattttactatgannnnnnn |
306 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
50442799 |
ctagcatgcagattgatatattgtcttctttttatttgtgtcaacgtgcgtttagattttactacatttctttttataaatattttactatga-tttttt |
50442701 |
T |
|
| Q |
307 |
gcctcctggcagcatttaagtatgttatttataatagctacaatattgatttgat |
361 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
50442700 |
gcctcctggcagcatttaagtacgttatttataatagctacaatattgatttgat |
50442646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University