View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_8 (Length: 369)
Name: NF10838_low_8
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 11584692 - 11585043
Alignment:
| Q |
1 |
agtgcttgaaagagactcctcacaaaatcaaagtggagctttgttgttggtatattttccttcaaatatttttctgtaggtaataagtttctttgtttat |
100 |
Q |
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| T |
11584692 |
agtgcttgaaagagactcctcacaaaatcaaagtggagctttgttgttggtatattttccttcaaatatttttctgtaggtaataagtttctttgtttat |
11584791 |
T |
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| Q |
101 |
gatattttgatttttgttaacatgttagggtttatgctacgtacagatgcatggagagatgcatgttctttcacctttagtgaaaccaagagaaatttac |
200 |
Q |
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| T |
11584792 |
gatattttgatttttattaacatgttagggtttatgctacgtacagatgcatggagagatgcatgttctttcacctttagtgaaaccaagacaattttac |
11584891 |
T |
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| Q |
201 |
ttccttcgctattgtgtacaagttgaagctggtatctgggtgattgctgatgtctcttatgattacttgaaagaggatggacctcattcttctttttgga |
300 |
Q |
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| T |
11584892 |
ttccttcgctattgtgtacaagttgaagctggtatctgggtgattgctgatgtctcttatgattacttgaaagaggatggacctcattcttccttttgga |
11584991 |
T |
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| Q |
301 |
ggtttccttctggatgtttgattcaacaaatatctaatgagacttccaaggt |
352 |
Q |
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| T |
11584992 |
ggtttccttctggatgtatgattcaacaaatatctaatgagacttccaaggt |
11585043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 11597160 - 11597219
Alignment:
| Q |
293 |
tttttggaggtttccttctggatgtttgattcaacaaatatctaatgagacttccaaggt |
352 |
Q |
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| T |
11597160 |
tttttggaggtttccttctggatgtttgattcaacaaatatctactgagacttccaaggt |
11597219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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