View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10839_high_3 (Length: 424)
Name: NF10839_high_3
Description: NF10839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10839_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 49125923 - 49126329
Alignment:
| Q |
1 |
ttatttattatgactgatttaatcatgaaagactccagctaataaattaaccaactaacaagtgtctttgtcggaaaacttggagggcatagtgaataat |
100 |
Q |
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| T |
49125923 |
ttatttattatgactgatttaatcatgaaagactccagctaataaattaaccaactaacaagtgtctttgtcggaaaacttggagggtatagtgaataat |
49126022 |
T |
|
| Q |
101 |
atagttacatgtttccttgaatgccttcatggccgagttgtgaaacaattttcgtgacatccaacattattccatgatttaagtccctcgcaatatcata |
200 |
Q |
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| T |
49126023 |
atagttacatgtttccttgaatgccttcatggccgagttgtgaaacaattttcgtgacatccaacattattccatgatttaagtccctcgcaatatcata |
49126122 |
T |
|
| Q |
201 |
aattttgttattgctgctcagtttttcatctcacttttgaaaaggtgtcaactccgatccatgtagccaactccatcagccagagagtctgtgtaaaagc |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |
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| T |
49126123 |
aattttgttattgctgctcagtttttcatctcgcttttgaaaaggtgtcaactccgatccatgtagccaacttcgtcagtcagagagtctgtgtaaaagc |
49126222 |
T |
|
| Q |
301 |
tacaaaatcttagttgtctgttacatgcgtttagatgttccaagcaaggatttcttatatcaaaattcagtagctgttacataggcttcttgacagacgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49126223 |
tacaaaatcttagttgtctgttacatgcgtttagatgttccaagcaaggatttcttatatcaaaattcagtagctgttacataggctttttgacagacgg |
49126322 |
T |
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| Q |
401 |
agttagc |
407 |
Q |
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| T |
49126323 |
agttagc |
49126329 |
T |
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