View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10839_high_5 (Length: 299)
Name: NF10839_high_5
Description: NF10839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10839_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 39418482 - 39418760
Alignment:
| Q |
18 |
cttaccaggggtatattgtgcagaagaggatccagctccaggaattaaagagcaaacaaaattgtctgaatgacccttgtagtcatggagggatcttacc |
117 |
Q |
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| T |
39418482 |
cttaccaggggtatattgtgcagaagaggatccagctccaggaattaaagagcaaacaaaattgtctgaatgacccttgtagtcatggagggatcttacc |
39418581 |
T |
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| Q |
118 |
ctttgaactagaaattcctaaaaccac------aaaatnnnnnnncatgttaggtttaaaacattattgataatttgtttgatactatgttgtcaaattt |
211 |
Q |
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| T |
39418582 |
ctttgaactagaaattcctaaaatcacaaaaaaaaaaaaaaaaaacatgttagttttaaaacattattgataatttgtttgatactatgttgtgaaattt |
39418681 |
T |
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| Q |
212 |
aggacctttgaaagaagtatccttgctccaacatgtttgttatcccaaccaaatgtgttgtcaaactctgctgctccta |
290 |
Q |
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| T |
39418682 |
aggacctttgaaagaagtatccttgctccaacatgtttgttatcccaaccaaatgtgttgtcaaactctgctgctccta |
39418760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 44512079 - 44512021
Alignment:
| Q |
206 |
aaatttaggacctttgaaagaagtatccttgctccaacatgtttgttatcccaaccaaa |
264 |
Q |
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| T |
44512079 |
aaattttggaccttagaaaggagtatccttgctccagcatgtttgttatcccatccaaa |
44512021 |
T |
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