View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10839_low_10 (Length: 280)

Name: NF10839_low_10
Description: NF10839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10839_low_10
NF10839_low_10
[»] chr3 (36 HSPs)
chr3 (18-277)||(19413660-19413919)
chr3 (18-273)||(18143710-18143968)
chr3 (18-279)||(19350865-19351129)
chr3 (38-279)||(18164618-18164862)
chr3 (42-279)||(19399176-19399419)
chr3 (46-279)||(19419451-19419684)
chr3 (42-279)||(18102898-18103141)
chr3 (139-279)||(18146286-18146426)
chr3 (42-279)||(18022264-18022504)
chr3 (42-279)||(19436336-19436579)
chr3 (18-279)||(19380361-19380628)
chr3 (18-279)||(17727954-17728224)
chr3 (18-279)||(19029183-19029453)
chr3 (140-279)||(19460988-19461127)
chr3 (32-279)||(25462506-25462762)
chr3 (139-279)||(17941200-17941340)
chr3 (140-279)||(18115421-18115560)
chr3 (140-279)||(19333453-19333592)
chr3 (133-279)||(19392593-19392739)
chr3 (32-259)||(24493706-24493942)
chr3 (141-279)||(18107908-18108046)
chr3 (139-279)||(16676669-16676809)
chr3 (139-279)||(19375150-19375290)
chr3 (18-121)||(18115597-18115700)
chr3 (18-121)||(19461164-19461267)
chr3 (18-279)||(14896664-14896934)
chr3 (18-121)||(17949450-17949554)
chr3 (18-121)||(16676842-16676945)
chr3 (18-279)||(18015562-18015829)
chr3 (18-121)||(19333641-19333744)
chr3 (32-121)||(19392772-19392861)
chr3 (18-121)||(17941370-17941473)
chr3 (18-116)||(18108067-18108165)
chr3 (42-120)||(18146454-18146532)
chr3 (71-121)||(19375317-19375367)
chr3 (241-279)||(19424045-19424083)
[»] chr8 (1 HSPs)
chr8 (32-276)||(8458944-8459191)
[»] chr6 (3 HSPs)
chr6 (140-276)||(13667279-13667415)
chr6 (18-121)||(13667145-13667248)
chr6 (72-117)||(2509634-2509679)
[»] scaffold2156 (2 HSPs)
scaffold2156 (140-279)||(335-474)
scaffold2156 (32-121)||(216-304)
[»] scaffold0640 (2 HSPs)
scaffold0640 (143-279)||(4856-4992)
scaffold0640 (32-121)||(5026-5115)
[»] chr4 (2 HSPs)
chr4 (42-279)||(15531819-15532062)
chr4 (18-121)||(2710850-2710953)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 19413919 - 19413660
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    |||||||||||||||||| |||||||||||||||||||||||||| | | | | ||| |||||| ||| || ||||||||||||||||||||||||||||    
T  19413919 agtgtattcactatttgaggccaattggtttccttatgaagatcaatccaactaagggtgagatatttcaacgaagaaagtggataaagccaatgaagat 19413820  T
Q  118 tatcgatagtgtctaagctataggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaata 217  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19413819 tattgatagtgtctaagctgtaggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatctcaccaaaata 19413720  T
Q  218 attatggctcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctc 277  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19413719 attgtggctcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctc 19413660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 18143968 - 18143710
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||| |||||    
T  18143968 agtgtattcactatttgaagccaattggtttccttatgaagatcaattccactgaggttgagatattttaaggaagaaagtggagaaagccaatcaagat 18143869  T
Q  118 tatcgata---gtgtctaagctataggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaa 214  Q
    |||| |||   ||  | ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||| | ||||||||||||| || ||||    
T  18143868 tatccataccagtaacaaagctgtaggataagtcaaggtagacaagtttagaggaatgtgtgatgttgtgttgaatggatggaattcttatcatatcaaa 18143769  T
Q  215 ataattatggctcaaatccaagtaactgagaaactcaagttctagaatacaaagattca 273  Q
    || |||    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18143768 atcattgaatctcaaatccaagtaactaagaaactcaagttctagaatacaaagattca 18143710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 19351129 - 19350865
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||||  ||||||||||| ||||| ||||||||||||| ||||||||| |||||    
T  19351129 agtgaattcactatttgaagccaattggtttccttatgaagatcaattccaccgaggttgagatattttatggaagaaagtggagaaagccaatcaagat 19351030  T
Q  118 tatcgatagtgt---ctaagctataggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaa 214  Q
    |||  |||   |   ||||||| ||||||||||||||||| ||||||||||| ||||||||||| || | || ||| | ||||||  |||||  | ||||    
T  19351029 tattcatatcattaactaagctgtaggataagtcaaggtagacaagtttagaggaatgtgtgatgtttttttgaatggatggaatagttatcacatcaaa 19350930  T
Q  215 ataattatggctcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    || ||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19350929 atgattctcactcaaacccaagtaactgagaaactcaagttctagaatacaaagattcatctcac 19350865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 38 - 279
Target Start/End: Complemental strand, 18164862 - 18164618
Alignment:
Q  38 ccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagattatcgata---gtgtctaag 134  Q
    ||||||||||||||||||||||||| |   | | |||||||||| ||| ||||||||||||||| ||||||||| ||||||||| |||   ||   ||||    
T  18164862 ccaattggtttccttatgaagatcaataaaactaaggttgagatatttcaaggaagaaagtggagaaagccaatcaagattatccatactagtaattaag 18164763  T
Q  135 ctataggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatcca 234  Q
    || | ||||||||||||||| ||||||||||||||||||||||  ||||||| ||| | || ||||||||||  | |||||| |||| | ||||||||||    
T  18164762 ctgttggataagtcaaggtagacaagtttagatgaatgtgtgaagttgtgttgaattgatgtaattcttatcacatcaaaatcattaagactcaaatcca 18164663  T
Q  235 agtaactgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    ||| |||||||||||||||||||||||||||||||||||||||||    
T  18164662 agtgactgagaaactcaagttctagaatacaaagattcatctcac 18164618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 42 - 279
Target Start/End: Complemental strand, 19399419 - 19399176
Alignment:
Q  42 ttggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagattatcgat----agtgtct--aagc 135  Q
    ||||||||||||||||||||| | | ||| |||||||||| ||||||||||||||||||| ||||||||| ||||||||| ||    || ||||   ||     
T  19399419 ttggtttccttatgaagatcaatccaattaaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatccatttgcagagtctgatagt 19399320  T
Q  136 tataggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatccaa 235  Q
    |  |||| ||||||| ||  ||||||||||||||||||||||||||||||| ||| | |||||||||||||  |  ||| | ||| |  |||||||||||    
T  19399319 tccaggagaagtcaaagtctacaagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaa 19399220  T
Q  236 gtaactgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  19399219 gtaactgagaaactcaagttctagaatacagagattcatctcac 19399176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 46 - 279
Target Start/End: Complemental strand, 19419684 - 19419451
Alignment:
Q  46 tttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagattatcgatagtgtctaa-gctataggata 144  Q
    ||||||||||||||||| |||||  ||||||||||| ||||||||||||||||||| ||||||||| ||||||||  || |||   || | |  ||||||    
T  19419684 tttccttatgaagatcaattccaccgaggttgagatattttaaggaagaaagtggagaaagccaatcaagattatacat-gtgaagaaagttgaaggata 19419586  T
Q  145 agtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatccaagtaactgag 244  Q
    ||||||| |  ||||| ||||||||||||||||| ||||||| ||| | |||||||||||||  |  ||| | |||||| ||||||||||||||||| ||    
T  19419585 agtcaagtttcacaaggttagatgaatgtgtgatgttgtgttgaatggatggaattcttatcacattaaatttattatgactcaaatccaagtaactaag 19419486  T
Q  245 aaactcaagttctagaatacaaagattcatctcac 279  Q
    |||||||||||| | ||||||||||||||||||||    
T  19419485 aaactcaagttcaaaaatacaaagattcatctcac 19419451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 42 - 279
Target Start/End: Complemental strand, 18103141 - 18102898
Alignment:
Q  42 ttggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagattatcgatagtgtctaa-------g 134  Q
    ||||||||||||||||||||| | | | | |||||||||| ||||||||||||||||||| ||||||| |||||| |||| || |||   ||       |    
T  18103141 ttggtttccttatgaagatcaatccaactaaggttgagatattttaaggaagaaagtggagaaagccagtgaagactatccat-gtgcagaataggatag 18103043  T
Q  135 ctataggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatcca 234  Q
     | ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| | |||||||||||||  | |||||| |||   |||||||||||    
T  18103042 ttgtaggataagtcaaggtagacaagtttagatgaatgtgtgatgttgtgttgaatggatggaattcttatcacatcaaaatgattccagctcaaatcca 18102943  T
Q  235 agtaactgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    ||||| |||||||||||||| | ||||||||||||||||| ||||    
T  18102942 agtaattgagaaactcaagtccaagaatacaaagattcatatcac 18102898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 139 - 279
Target Start/End: Complemental strand, 18146426 - 18146286
Alignment:
Q  139 aggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatccaagta 238  Q
    |||||||||||||||| | ||| ||||||  ||||||||||||||||| ||| | ||||||||||||| || ||||||||||||  ||||||||||||||    
T  18146426 aggataagtcaaggtacaaaaggttagatatatgtgtgatattgtgttgaatggatggaattcttatcatatcaaaataattatcactcaaatccaagta 18146327  T
Q  239 actgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    | | |||||||||||||| ||||||||||||||||||||||    
T  18146326 attaagaaactcaagttcaagaatacaaagattcatctcac 18146286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 42 - 279
Target Start/End: Complemental strand, 18022504 - 18022264
Alignment:
Q  42 ttggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagattatcgatagtgtcta--agc--ta 137  Q
    |||||||||||||||||||||  |||| |||||| ||||| ||| ||||||||||||| | ||||||| | ||||||||| || |||   |  | |  ||    
T  18022504 ttggtttccttatgaagatcaagtccactgaggtcgagatatttcaaggaagaaagtgaagaaagccagtcaagattatctat-gtgaagaccatcatta 18022406  T
Q  138 taggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatccaagt 237  Q
     |||||||||||||||| | || ||||||||| |||||||| ||||||| ||||| |||||||||||||  | |||| | |||||| ||||||||||| |    
T  18022405 aaggataagtcaaggtagaaaaatttagatgagtgtgtgatgttgtgttgaatagatggaattcttatcacatcaaattcattatgactcaaatccaaat 18022306  T
Q  238 aactgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    |||| |||||||||||||| |||||||||||||||| |||||    
T  18022305 aactaagaaactcaagttcaagaatacaaagattcagctcac 18022264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 279
Target Start/End: Complemental strand, 19436579 - 19436336
Alignment:
Q  42 ttggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagattatcgatagtgtctaa-------g 134  Q
    ||||||||||||||||||||| || || | |||||||||| ||||||||||||||| | | ||||||||| ||||||||  || |||   ||       |    
T  19436579 ttggtttccttatgaagatcaatttcagtaaggttgagatattttaaggaagaaagggaagaaagccaatcaagattattcat-gtgcagaataggatag 19436481  T
Q  135 ctataggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatcca 234  Q
     | || |||||||||||||| | ||||||||||||||||||||||||||||| ||| | || ||||||||||  | |||||| |||    ||||||||||    
T  19436480 ttgtacgataagtcaaggtagagaagtttagatgaatgtgtgatattgtgttgaatggatgaaattcttatcacatcaaaatcattcacactcaaatcca 19436381  T
Q  235 agtaactgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||    
T  19436380 agtaactaagaaactcaagttttagaatacaaagattcatctcac 19436336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 19380628 - 19380361
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    ||||||||||||| ||||  ||||||  ||||||||||||||| | |||||| ||||||||||| ||||||||||||||||||| ||||||||| |||||    
T  19380628 agtgtattcactacttgaaaccaattattttccttatgaagataaattccatcgaggttgagatattttaaggaagaaagtggagaaagccaatcaagat 19380529  T
Q  118 tatcgatagtgtctaag-ctata------ggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttac 210  Q
    |||| || |||   | | | |||      ||||||||||||||  | |||  ||||||||||||| || || |||| ||| | |||||||||||||  |     
T  19380528 tatccat-gtgcagaggaccatataagtgggataagtcaaggtgcaaaaggatagatgaatgtgtaatgttttgttgaatggatggaattcttatcacat 19380430  T
Q  211 caaaataattatggctcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    |||||| ||| |  ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  19380429 caaaattattttcactcaaatccaagtaactaagaaacttaagttcaagaatacaaagattcatctcac 19380361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 17727954 - 17728224
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    |||||||||| || |||| ||||||| |||||||||||||||||| |||||||||||||||||| || |||||||||||||||| ||||||||||||||     
T  17727954 agtgtattcaatacttgaagccaatttgtttccttatgaagatcaattccattgaggttgagatattgtaaggaagaaagtggagaaagccaatgaagac 17728053  T
Q  118 tatcgat----agtgtctaagct--at---aggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatctt 208  Q
    |||| ||    || ||   | ||  ||   |||||||||||  ||| | ||| || |||||| ||||||| ||||| | ||| | ||||||||||||       
T  17728054 tatccatgtgcagagttggaccttgatttaaggataagtcagtgtacaaaaggttcgatgaacgtgtgatgttgtgatgaatggatggaattcttatggc 17728153  T
Q  209 accaaaataattatggctcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    | |||| | |||   |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  17728154 atcaaatttattgaagctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcac 17728224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 19029183 - 19029453
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    |||||||||| || |||| ||||||| |||||||||||||||||| |||||||||||||||||| || |||||||||||||||| ||||||||||||||     
T  19029183 agtgtattcaatacttgaagccaatttgtttccttatgaagatcaattccattgaggttgagatattgtaaggaagaaagtggagaaagccaatgaagac 19029282  T
Q  118 tatcgat----agtgtctaagct--at---aggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatctt 208  Q
    |||| ||    || ||   | ||  ||   |||||||||||  ||| | ||| || |||||| ||||||| ||||| | ||| | ||||||||||||       
T  19029283 tatccatgtgcagagttggaccttgatttaaggataagtcagtgtacaaaaggttcgatgaacgtgtgatgttgtgatgaatggatggaattcttatggc 19029382  T
Q  209 accaaaataattatggctcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    | |||| | |||   |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  19029383 atcaaatttattgaagctcaaatccaagtaactaagaaactcaagttcaagaatacaaagattcatctcac 19029453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 140 - 279
Target Start/End: Complemental strand, 19461127 - 19460988
Alignment:
Q  140 ggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatccaagtaa 239  Q
    ||||||||||||||| | ||| ||||||||||||||||| ||||||| ||| | ||||| |||||||  | |||| | |||  | |||||||||||||||    
T  19461127 ggataagtcaaggtagaaaaggttagatgaatgtgtgatgttgtgttgaatggatggaaatcttatcacatcaaattcattcagactcaaatccaagtaa 19461028  T
Q  240 ctgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19461027 ctgagaaactcaagttctagaatacaaagattcatctcac 19460988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 279
Target Start/End: Complemental strand, 25462762 - 25462506
Alignment:
Q  32 ttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagattatcgat------a 125  Q
    |||| ||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||| | |||| ||||||||||||||||||| ||      |    
T  25462762 ttgaagccaattagtttccttatgaagatcaattgcattgaggttgagatattttaaggaagataatggagaaagccaatgaagattatccatgtgaaga 25462663  T
Q  126 gtgtctaagctata----ggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataatta 221  Q
    |||| ||||    |    |||||||||||| ||  |||||||||||||||||||||| ||||||| ||  | |||||| |||||  |   ||| | ||||    
T  25462662 gtgt-taagggtgagcggggataagtcaagatagtcaagtttagatgaatgtgtgatgttgtgttgaaaggctggaatacttatgatgttaaattcatta 25462564  T
Q  222 tggctcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    |  || |||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  25462563 tcacttaaatccaagtaactgagaaactcaagttctagaacacatagattcatctcac 25462506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 279
Target Start/End: Complemental strand, 17941340 - 17941200
Alignment:
Q  139 aggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatccaagta 238  Q
    ||||||||| |||||  ||||||||||| ||||||||||| ||||||| ||| | |||||||||||||  | |||| | |||||  ||||||||||| ||    
T  17941340 aggataagttaaggtggacaagtttagaggaatgtgtgatgttgtgttgaatggatggaattcttatcacatcaaatttattatcactcaaatccaaata 17941241  T
Q  239 actgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  17941240 actgagaaactcaagttcaagaatacaaagattcatctcac 17941200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 140 - 279
Target Start/End: Complemental strand, 18115560 - 18115421
Alignment:
Q  140 ggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatccaagtaa 239  Q
    ||||||||||||||  | ||| ||||||||||||||||  ||||||| ||| | ||||| |||||||  | |||||| |||   ||||||||||||||||    
T  18115560 ggataagtcaaggtggaaaaggttagatgaatgtgtgaggttgtgttgaatggatggaaatcttatcacatcaaaatcatttgagctcaaatccaagtaa 18115461  T
Q  240 ctgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18115460 ctgagaaactcaagttctagaatacaaagattcatctcac 18115421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 140 - 279
Target Start/End: Complemental strand, 19333592 - 19333453
Alignment:
Q  140 ggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatccaagtaa 239  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||  ||| | ||||||| |||||    ||||   |||  | |||||||||||||||    
T  19333592 ggataagtcaaggtatacaagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaa 19333493  T
Q  240 ctgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19333492 ctgagaaactcaagttctagaatacaaagattcatctcac 19333453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 19392739 - 19392593
Alignment:
Q  133 agctataggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatc 232  Q
    |||| |||||||||||||||||  |||||||||||||||| ||||| ||| ||| ||| | |||||||||||||    |||||| |||   |||||||||    
T  19392739 agctgtaggataagtcaaggtaggcaagtttagatgaatgcgtgatgttgcgttgaatggctggaattcttatcacgtcaaaatcattcccgctcaaatc 19392640  T
Q  233 caagtaactgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  19392639 caagtaacttagaaactcaagttgtagaatacaaagattcatctcac 19392593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 259
Target Start/End: Original strand, 24493706 - 24493942
Alignment:
Q  32 ttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagattatcgat------a 125  Q
    |||| ||||||||||||||| | |||||||  ||||| | |||||||||| ||| || ||||||||||||  |||||||||||||||||| ||      |    
T  24493706 ttgaagccaattggtttcctcacgaagatcgattccactaaggttgagatatttcaacgaagaaagtggaggaagccaatgaagattatccatgtgaaga 24493805  T
Q  126 gtgtctaagctatagg---ataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattat 222  Q
    ||  | |||||   ||   ||||||||||||| ||||||||||||||||||||||| |||| || ||| |||||||| ||||||  | ||||||  ||||    
T  24493806 gtaccaaagctgaggggggataagtcaaggtagacaagtttagatgaatgtgtgatgttgttttgaatggttggaatacttatcaaatcaaaatcgttat 24493905  T
Q  223 ggctcaaatccaagtaactgagaaactcaagttctag 259  Q
     |||||| ||||||||||| |||||||||||||||||    
T  24493906 cgctcaagtccaagtaactaagaaactcaagttctag 24493942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 141 - 279
Target Start/End: Complemental strand, 18108046 - 18107908
Alignment:
Q  141 gataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatccaagtaac 240  Q
    |||||||||||||    ||| ||||||||||||||||||||||||| ||| | ||||||||||||   | |||||| |||   ||||||||| || ||||    
T  18108046 gataagtcaaggtgcgaaaggttagatgaatgtgtgatattgtgttgaatggatggaattcttatgacatcaaaatcattccagctcaaatctaaataac 18107947  T
Q  241 tgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  18107946 tgagaaactcaaggtcaagaatacaaagattcatctcac 18107908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 139 - 279
Target Start/End: Complemental strand, 16676809 - 16676669
Alignment:
Q  139 aggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatccaagta 238  Q
    |||||||||||||||| ||||| ||||||| ||||||||  || |||| ||| | ||||||||||||     |||| | |||   |||||||||||||||    
T  16676809 aggataagtcaaggtagacaaggttagatgcatgtgtgaggttttgttgaatggatggaattcttattaggtcaaattcattccagctcaaatccaagta 16676710  T
Q  239 actgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    | | |||||||||||||||||||||||||||||||||||||    
T  16676709 aattagaaactcaagttctagaatacaaagattcatctcac 16676669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 139 - 279
Target Start/End: Complemental strand, 19375290 - 19375150
Alignment:
Q  139 aggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatccaagta 238  Q
    |||||||||||||| | | ||| ||||||||||||||||  ||||||| ||| |  ||||||||||||    |||| | |||    ||||||||||||||    
T  19375290 aggataagtcaaggaacaaaaggttagatgaatgtgtgaagttgtgttgaatggacggaattcttatcacgtcaaattcattgaaactcaaatccaagta 19375191  T
Q  239 actgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  19375190 actgagaaactcaagttctagaatataaagattcatctcac 19375150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 18115700 - 18115597
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    |||||||||||||||||| |||||||||||||||||||||||| | ||||| | |||| ||||| ||| ||||||||| ||||| ||||||||  |||||    
T  18115700 agtgtattcactatttgaagccaattggtttccttatgaagatgaattccactaaggtcgagatatttcaaggaagaatgtggagaaagccaaccaagat 18115601  T
Q  118 tatc 121  Q
    ||||    
T  18115600 tatc 18115597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 19461267 - 19461164
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    |||||||||||||||||| |||||||||||||||||||||||| | ||||| | |||| ||||| ||| ||||||||| ||||| ||||||||  |||||    
T  19461267 agtgtattcactatttgaagccaattggtttccttatgaagatgaattccactaaggtcgagatatttcaaggaagaatgtggagaaagccaaccaagat 19461168  T
Q  118 tatc 121  Q
    ||||    
T  19461167 tatc 19461164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 14896664 - 14896934
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    |||||| |||||| |||| ||||||||| |||||| ||||||||| ||||| | ||| |||||| ||| ||||||||| ||||| ||||||||| |||||    
T  14896664 agtgtactcactacttgaagccaattggattccttgtgaagatcaattccactaaggatgagatatttcaaggaagaatgtggagaaagccaatcaagat 14896763  T
Q  118 tatcgat---------agtgtctaagctataggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatctt 208  Q
    |||| ||         ||   ||  | |  |||||||||||||||| | |||  |||||||||||||||| ||||||| | |   |||||| ||||||      
T  14896764 tatccatgtgcagattaggaccttcgttgaaggataagtcaaggtagaaaaggctagatgaatgtgtgatgttgtgttgagtgactggaatacttatcac 14896863  T
Q  209 accaaaataattatggctcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    | |||||| |||    |||||||| ||||||||||||||||| ||||| |||||||||||| |||||||||    
T  14896864 atcaaaatgattcatactcaaatctaagtaactgagaaactccagttcgagaatacaaagactcatctcac 14896934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 17949554 - 17949450
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttat-gaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaaga 116  Q
    |||| |||||||| ||||  ||||||  ||||||||| |||||||| |||||  |||||||||||  |||||||||||||||||| ||||||||||||||    
T  17949554 agtgaattcactacttgaaaccaattattttccttattgaagatcaattccaccgaggttgagataatttaaggaagaaagtggagaaagccaatgaaga 17949455  T
Q  117 ttatc 121  Q
    |||||    
T  17949454 ttatc 17949450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 16676945 - 16676842
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    |||||||||||| | |||  |||||||||||||||||||||||||  |||| | |||| |||||  || ||||||||||||  | |||||||||||||||    
T  16676945 agtgtattcactttctgaatccaattggtttccttatgaagatcaagtccactaaggtcgagatacttcaaggaagaaagtataaaaagccaatgaagat 16676846  T
Q  118 tatc 121  Q
    ||||    
T  16676845 tatc 16676842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 18015829 - 18015562
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| | | | | |||||||||| ||| || || ||| ||||  |||||||||  ||||    
T  18015829 agtgaattcactatttgaagccaattggtttccttatgaagatcaatccaactaaggttgagatatttcaacgacgaatgtggtgaaagccaatccagat 18015730  T
Q  118 tatcgat----agtgtctaagctatagg--ataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttacc 211  Q
    |||| ||    || ||  |||     ||   |||||||||||| | ||| ||||| ||||||||||| |||| || ||| | |||||| ||||||  | |    
T  18015729 tatccatgtgaagagtaaaagtgggggggtgtaagtcaaggtagaaaaggttagaggaatgtgtgatgttgttttgaatggatggaatacttatcacatc 18015630  T
Q  212 aaaataattatggctcaaatccaagtaactgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    ||| | |||    ||||||||||||||||| ||||| |||||||||| |||||||| |||||||||||    
T  18015629 aaattcattgaaactcaaatccaagtaactaagaaattcaagttctaaaatacaaaaattcatctcac 18015562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 19333744 - 19333641
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    |||| |||||||||||||  | |||||||||||||| |||||||| |   | | |||||||||| ||||||||||||||||| | ||||||||||||||     
T  19333744 agtgaattcactatttgaaacaaattggtttccttaggaagatcaatgttactaaggttgagatattttaaggaagaaagtgaagaaagccaatgaagac 19333645  T
Q  118 tatc 121  Q
    ||||    
T  19333644 tatc 19333641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 19392861 - 19392772
Alignment:
Q  32 ttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagattatc 121  Q
    |||| |||||||||||||||||||||||||| ||||| | |||  ||||| ||| || |||||||||||| ||||||||| |||| ||||    
T  19392861 ttgaagccaattggtttccttatgaagatcaattccacttaggaagagatatttcaatgaagaaagtggagaaagccaatcaagactatc 19392772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 17941473 - 17941370
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    ||||||||||||  |||| ||||||| ||||||| |||||||||| | ||| | |||  ||||| ||| |||| ||||| |||| |||||||||||||||    
T  17941473 agtgtattcactgcttgaagccaattagtttcctcatgaagatcaatgccactaaggcggagatatttcaaggtagaaaatggagaaagccaatgaagat 17941374  T
Q  118 tatc 121  Q
    ||||    
T  17941373 tatc 17941370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 18108165 - 18108067
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaaga 116  Q
    |||| |||||||| ||||  ||| |||||||||||||||||||||  ||||   ||| |||||| ||| ||||||||| ||| | ||||||||||||||    
T  18108165 agtgaattcactacttgaaaccagttggtttccttatgaagatcaactccaccaaggctgagatatttcaaggaagaatgtgaagaaagccaatgaaga 18108067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 18146532 - 18146454
Alignment:
Q  42 ttggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagattat 120  Q
    ||||||||||| ||||||||| |  || | |||  ||||| ||| ||||||||||||||| ||||||||||||||||||    
T  18146532 ttggtttccttgtgaagatcaatctcactaagggagagatatttcaaggaagaaagtggagaaagccaatgaagattat 18146454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 19375367 - 19375317
Alignment:
Q  71 gaggttgagatgttttaaggaagaaagtggataaagccaatgaagattatc 121  Q
    ||||||||||| ||| ||||||||||||| | ||||||| |||||||||||    
T  19375367 gaggttgagatatttcaaggaagaaagtgaagaaagccattgaagattatc 19375317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 19424083 - 19424045
Alignment:
Q  241 tgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  19424083 tgagaaactcaagttcgagaatacaaagattgatctcac 19424045  T

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Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 276
Target Start/End: Complemental strand, 8459191 - 8458944
Alignment:
Q  32 ttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagattatcga---tagtg 128  Q
    |||| ||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||  |    |||     
T  8459191 ttgaagccaattagtttccttatgaagatcaattccattgaggttgagattttttaaggaagaaagtggagaaagccattgaagattattcaaagcagta 8459092  T
Q  129 tctaagctataggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctca 228  Q
     ||| | | ||||||||||||||||  | ||| ||||||| ||||||||| ||||||| ||| | |||||||||||||  | |||| | ||    |||||    
T  8459091 actacggtgtaggataagtcaaggtgcaaaaggttagatgcatgtgtgatgttgtgttgaatcgatggaattcttatcacatcaaatttatgtaagctca 8458992  T
Q  229 aatccaagtaactgagaaactcaagttctagaatacaaagattcatct 276  Q
    ||||||||||||| ||||||||||||||||||||  ||||||| ||||    
T  8458991 aatccaagtaactcagaaactcaagttctagaatggaaagattgatct 8458944  T

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Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 140 - 276
Target Start/End: Original strand, 13667279 - 13667415
Alignment:
Q  140 ggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatccaagtaa 239  Q
    ||||||||||||||| |||||||||||||||| |||||| ||||||| ||| | || |||| |||||  | |||| | |||||| ||||||||||| ||     
T  13667279 ggataagtcaaggtagacaagtttagatgaatttgtgatgttgtgttgaatggatgaaatttttatcacatcaaattcattatgactcaaatccaaatag 13667378  T
Q  240 ctgagaaactcaagttctagaatacaaagattcatct 276  Q
    |||||||||| ||||||||||||||||||||||||||    
T  13667379 ctgagaaacttaagttctagaatacaaagattcatct 13667415  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 13667145 - 13667248
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    ||||||||||||| |||  ||||||| |||||||||||||||||| | ||||| |    ||||| ||| |||||||||| |||| ||| |||||||||||    
T  13667145 agtgtattcactacttggagccaattagtttccttatgaagatcaatgccattaaaccggagatatttcaaggaagaaaatggagaaaaccaatgaagat 13667244  T
Q  118 tatc 121  Q
    ||||    
T  13667245 tatc 13667248  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 2509679 - 2509634
Alignment:
Q  72 aggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||    
T  2509679 aggttgagatattttaaggaagaaagtggagaaagccaatgaagat 2509634  T

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Target: scaffold2156 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 279
Target Start/End: Original strand, 335 - 474
Alignment:
Q  140 ggataagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatccaagtaa 239  Q
    ||||||||||||||| ||||||||||||||| ||||||| ||||||| | |  |||||| ||||||     |||||| ||| | ||||||||||||||||    
T  335 ggataagtcaaggtagacaagtttagatgaacgtgtgatgttgtgttgagtgattggaactcttataacgtcaaaatcattgtagctcaaatccaagtaa 434  T
Q  240 ctgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    || | |||||||||||||||||||||||||||||||||||    
T  435 ctcaaaaactcaagttctagaatacaaagattcatctcac 474  T

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Target: scaffold2156; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 216 - 304
Alignment:
Q  32 ttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagattatc 121  Q
    |||| |||| |||||||||||| |||||||| | ||| | ||| |||||| ||| ||||| ||||||| | |||||||||||||||||||    
T  216 ttgaagccagttggtttccttacgaagatcaatcccaataaggatgagatattt-aaggatgaaagtgaagaaagccaatgaagattatc 304  T

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Target: scaffold0640 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 279
Target Start/End: Complemental strand, 4992 - 4856
Alignment:
Q  143 taagtcaaggtaaacaagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatcttaccaaaataattatggctcaaatccaagtaactg 242  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||| | |  |||||| ||||||     |||||| ||| | ||||||||||||||||||     
T  4992 taagtcaaggtagacaagtttagatgaacgtgtgatgttgtgttgagtgattggaactcttataacgtcaaaatcattgtagctcaaatccaagtaactc 4893  T
Q  243 agaaactcaagttctagaatacaaagattcatctcac 279  Q
    | |||||||||||||||||||||||||||||||||||    
T  4892 aaaaactcaagttctagaatacaaagattcatctcac 4856  T

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Target: scaffold0640; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 5115 - 5026
Alignment:
Q  32 ttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagattatc 121  Q
    |||| |||| |||||||||||| |||||||| | ||| | ||| |||||| ||| ||||| ||||||| | |||||||||||||||||||    
T  5115 ttgaagccagttggtttccttacgaagatcaatcccactaaggatgagatatttcaaggatgaaagtgaagaaagccaatgaagattatc 5026  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 279
Target Start/End: Complemental strand, 15532062 - 15531819
Alignment:
Q  42 ttggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagattatcgatagtgtcta--agc--ta 137  Q
    ||||||||||||||||||||| | | ||| |||||||||| ||| ||||| ||||||||| ||||||||| ||||||||| || |||   |  | |  |     
T  15532062 ttggtttccttatgaagatcaatccaattaaggttgagatatttcaaggatgaaagtggagaaagccaatcaagattatccat-gtgaagaccaccattt 15531964  T
Q  138 taggataagtcaaggtaaacaagtttagatgaatgtgtgatattg---tgtttaatagttggaattcttatcttaccaaaataattatggctcaaatcca 234  Q
     |||||||||||||||| | ||| |||||||||||||||||||||   | || ||| | |||||| |||| |  | |||||| |||  | |||||||| |    
T  15531963 aaggataagtcaaggtacaaaaggttagatgaatgtgtgatattgttattttgaatggatggaatgcttagcacatcaaaatcattccgactcaaatcga 15531864  T
Q  235 agtaactgagaaactcaagttctagaatacaaagattcatctcac 279  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||    
T  15531863 agtaactaagaaactcaagttttagaatacaaagattcatctcac 15531819  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 2710850 - 2710953
Alignment:
Q  18 agtgtattcactatttgacgccaattggtttccttatgaagatcatttccattgaggttgagatgttttaaggaagaaagtggataaagccaatgaagat 117  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| | ||  |||||||||||| ||| || |||||||||||| ||||||||| |||||    
T  2710850 agtgtattcactatttgaagccaattggtttctttatgaagatcaataccgctgaggttgagatatttcaaagaagaaagtggagaaagccaattaagat 2710949  T
Q  118 tatc 121  Q
    ||||    
T  2710950 tatc 2710953  T

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