View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10839_low_11 (Length: 269)
Name: NF10839_low_11
Description: NF10839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10839_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 40200763 - 40201018
Alignment:
| Q |
1 |
aacttagcacaccgttaaacggacaataaaaatatatgaagatgccaatttccctttagttaataatgattatctatatttagtttttgttatgttccaa |
100 |
Q |
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| T |
40200763 |
aacttagcacaccgttaaacggacaataaaaatatatggagatgccaatttccctttagttaataatgattatctatatttagtttttgtcatgttccaa |
40200862 |
T |
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| Q |
101 |
aaatgcaacttcattgg-----nnnnnnnnnnggcaaaacgcataaaataatttctcttgaagcgaccacactactaaaaatacaccttgtgcataggat |
195 |
Q |
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| T |
40200863 |
aaatgcaacttcattggaagaaaaaaaaaaagggcaaaacgcataaaataatttctcttgaagcgaccacactactaaaaatacaccttgtgcatgggat |
40200962 |
T |
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| Q |
196 |
gatagtagagttgaccggagaagatacttta---agcatattgacaagaatagtgt |
248 |
Q |
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| T |
40200963 |
gatagtagagttgactggagaagatactttaactagcatattgacgagaatagtgt |
40201018 |
T |
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