View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10839_low_12 (Length: 253)
Name: NF10839_low_12
Description: NF10839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10839_low_12 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 28036153 - 28035912
Alignment:
| Q |
12 |
agcaaaggtgctcatgaagattataagcttgttgctcacccaggtactaatcaaacatctaaccaaatgcataatgtcatctctaacacaatagccataa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28036153 |
agcaaaggtgctcatgaagattataagcttgttgctcacccaggtactaatcaaacatctaaccaaatgcataatgtcatctctaacacaatagccataa |
28036054 |
T |
|
| Q |
112 |
agggaaataatagtaaggattctaaagaagataatgccaacgatgttgtaaagcacaacatcaacatcaacagccacagccacaataaccacaatgtatc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28036053 |
agggaaataatagtaaggattctaaagaagataatgccaacgatgttgaaaagcacaacatcaacatcaacagccacagccacaataaccacaatgtatc |
28035954 |
T |
|
| Q |
212 |
tatagcggggacgagtatcaaagggagagaatttgaagatcc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28035953 |
tatagcggggacgagtatcaaagggagagaatttgaagatcc |
28035912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University