View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10839_low_13 (Length: 251)
Name: NF10839_low_13
Description: NF10839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10839_low_13 |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 39418904 - 39418787
Alignment:
| Q |
134 |
gagtcatactcaaaattatagtacttttgactgatgggtttgtaatgacttgttaggatgagttgttgtggggtgctgcttggttacacaaagctacaaa |
233 |
Q |
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| T |
39418904 |
gagtcatactcaaaattatagtacttttgactgatgggtttgtaatgacttgttaggatgagttgttgtggggtgctgcttggttacacaaagccacaaa |
39418805 |
T |
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| Q |
234 |
gaatccaatgtacctaaa |
251 |
Q |
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| T |
39418804 |
gaatccaatgtacctaaa |
39418787 |
T |
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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 39419027 - 39418950
Alignment:
| Q |
11 |
cacagaggaccttacagcaatgtcttaaaaccctttgtgtgtcccttttactgtgattactctggttatcaggtaaag |
88 |
Q |
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| T |
39419027 |
cacagaggaccttacagcaatgtcttaaaaccctttgtgtgtcccttttactgggattactctggttatcaggtaaag |
39418950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 44511906 - 44511968
Alignment:
| Q |
189 |
ggatgagttgttgtggggtgctgcttggttacacaaagctacaaagaatccaatgtacctaaa |
251 |
Q |
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| T |
44511906 |
ggatgagttgttgtggggtgctgcttggcttcacaaggccactaagaacctaatgtacttaaa |
44511968 |
T |
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