View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10839_low_16 (Length: 242)
Name: NF10839_low_16
Description: NF10839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10839_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 2509926 - 2510023
Alignment:
| Q |
1 |
atatcaaactttttagaaaagtttgatgtttgtttgtaaactttttcgttgtatccaacgattgcatttaatactataaaattgatctacacgtaaat |
98 |
Q |
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| T |
2509926 |
atatcaaactttttagaaaagtttgatgtttgtttgtaaactttttcgttgtatccaacgattgcatttaatactataaaattgatctacacgtaaat |
2510023 |
T |
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Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 2510306 - 2510447
Alignment:
| Q |
99 |
tataaaaaacccatattaattaaaatcattcaatattgttgacaattgaaaaagaaatttg-----------------acaacaattgtccaaaaaatgt |
181 |
Q |
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| T |
2510306 |
tataaaaaacccatattaattaaaatcattcaatattgttgacaattgaaaaagaaatttgacaaaatcttgaactctacaacaattgtccaaaaaatgt |
2510405 |
T |
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| Q |
182 |
caacaaatctttccacttcattaaatgtatgtgagagtgtct |
223 |
Q |
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| T |
2510406 |
caacaaatctttccacttcattaaatgtatgtgagagtgtct |
2510447 |
T |
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