View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10839_low_2 (Length: 447)
Name: NF10839_low_2
Description: NF10839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10839_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 440
Target Start/End: Complemental strand, 7662256 - 7661841
Alignment:
| Q |
20 |
taactgagatgaataaaaaaccgagatgaaattaaagaaatgatcaacaaactatatcacaatttttcacttatatgcaatgataatatatattctttaa |
119 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
7662256 |
taaccgagatgaataaaaaaacgagatgaaattaaagaaa--------aaactatatcaaaatttttcacttataagcaatgataatatatattctttaa |
7662165 |
T |
|
| Q |
120 |
catcaataatttaaagtcaaactataactaaaacttaatgtnnnnnnnnn--ccacatacacacctaagtagtttaatttacaatttttaagtctatgta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7662164 |
catcaataatttaaagtcaaactataactaaaacttaatgtaaaaaaaaaaaccacatacacacctaagtagtttaatttacaatttttaagtctatgta |
7662065 |
T |
|
| Q |
218 |
ttgagttgttttgtgttaaaatattcaattaattcatcgggttgacgcaactatgtatcccattttcttatggttttatcttctctttgaaagactttct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7662064 |
ttgagttgttttgtgttaaaatattcaattaattcatcgggttgacgcaactatgtatcccattttcttatggttttatcttctctttgaaagactttct |
7661965 |
T |
|
| Q |
318 |
aatagaatatgt-atccaagaaaagtcttttaccctttttatccaagaaaagttcagctttgtcctaatcaaattagcatgcatggatgagtggatccca |
416 |
Q |
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|||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
7661964 |
aatataatatttaatccaagaaaagtcttttaccctttttatccaagaaaagttcagctttgtcctaatcacattagcatgaatggatgagtggatccca |
7661865 |
T |
|
| Q |
417 |
cttataaaagattttttcttctct |
440 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7661864 |
cttataaaagattttttcttctct |
7661841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 7621933 - 7622347
Alignment:
| Q |
20 |
taactgagatgaataaaaaaccgagatgaaattaaagaaatgatcaacaaactatatcacaatttttcacttatatgcaatgataatatatattctttaa |
119 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||||||||||||||| |
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| T |
7621933 |
taaccgagatgaataaaaaaa-gagatgaaattaaagaaa--------aaactatatcaaaatttttcacttataagctatgataatatatattctttaa |
7622023 |
T |
|
| Q |
120 |
catcaataatttaaagtcaaactataactaaaacttaatgtnnnnnnnnn--ccacatacacacctaagtagtttaatttacaatttttaagtctatgta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622024 |
catcaataatttaaagtcaaactataactaaaacttaatgtaaaaaaaaaaaccacatacacacctaagtagtttaatttacaatttttaagtctatgta |
7622123 |
T |
|
| Q |
218 |
ttgagttgttttgtgttaaaatattcaattaattcatcgggttgacgcaactatgtatcccattttcttatggttttatcttctctttgaaagactttct |
317 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622124 |
ttgagttgttttgtgttaaaatatttaattaattcatcgggttgacgcaactatgtatcccattttcttatggttttatcttctctttgaaagactttct |
7622223 |
T |
|
| Q |
318 |
aatagaatatgt-atccaagaaaagtcttttaccctttttatccaagaaaagttcagctttgtcctaatcaaattagcatgcatggatgagtggatccca |
416 |
Q |
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|||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
7622224 |
aatataatatttaatccaagaaaagtcttttaccctttttatccaagaaaagttcagctttgtcctaatcacattagcatgaatggatgagtggatccca |
7622323 |
T |
|
| Q |
417 |
cttataaaagattttttcttctct |
440 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7622324 |
cttataaaagattttttcttctct |
7622347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 226 - 306
Target Start/End: Complemental strand, 7660719 - 7660639
Alignment:
| Q |
226 |
ttttgtgttaaaatattcaattaattcatcgggttgacgcaactatgtatcccattttcttatggttttatcttctctttg |
306 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |
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| T |
7660719 |
ttttgtgtaaaaatattcaattaattcgtcgggttgacgcaattatgtatcccattttcttatgattttttcttctctttg |
7660639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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