View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10839_low_20 (Length: 218)
Name: NF10839_low_20
Description: NF10839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10839_low_20 |
 | |
|
| [»] scaffold0384 (1 HSPs) |
| | |
|
| [»] scaffold0079 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 46428263 - 46428449
Alignment:
| Q |
15 |
aacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46428263 |
aacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagtt |
46428362 |
T |
|
| Q |
115 |
c---ttgattgagtgttaatatggacatgtgtttatcttgccattgttgccaggcttgggaaattcaacccatttcattctattttttcctatgc |
206 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46428363 |
ctaattgattgag--------tggacatgtgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctattttttcctatgc |
46428449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 46015901 - 46016078
Alignment:
| Q |
15 |
aacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagtt |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46015901 |
aacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaatgcaagtt |
46016000 |
T |
|
| Q |
115 |
cttgattgagtgttaatatggacatgtgtttatcttgccattgttgccaggcttgggaaattcaacccatttcattct |
192 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46016001 |
cttgattgagtgttaatatacacatatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct |
46016078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 46027946 - 46028069
Alignment:
| Q |
15 |
aacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagtt |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
46027946 |
aacatgtacttcgtccatctgttatgatttaaattttgactttaaa-ctatgtgaagatacaattatttttgctttcctgtttttatgaagatgcaagtt |
46028044 |
T |
|
| Q |
115 |
cttgattgagtgttaatatggacat |
139 |
Q |
| |
|
|||| ||||||||||||||| |||| |
|
|
| T |
46028045 |
cttgtttgagtgttaatatgcacat |
46028069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 28 - 192
Target Start/End: Original strand, 46020807 - 46020976
Alignment:
| Q |
28 |
tccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatt------tttgctttcctgtttttatgaaaatgcaagttcttgatt |
121 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| | | ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
46020807 |
tccatctgttatgatttacgttttgactttaaaactatgtgaagatacaattattcacaaataagttttcctgtttt-atgaaaatccaagttcttgatt |
46020905 |
T |
|
| Q |
122 |
gagtgttaatatggacatgtgtttatcttgccattgttgccaggcttgggaaattcaacccatttcattct |
192 |
Q |
| |
|
||||||||| ||| |||| ||| ||||||||| |||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
46020906 |
gagtgttaaaatgcacatatgtctatcttgccgttgttgccagacttgggaaattcagcccatttcattct |
46020976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 46015355 - 46015479
Alignment:
| Q |
15 |
aacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagtt |
114 |
Q |
| |
|
|||||| ||||| |||| |||||||||| |||||||||| |||||||| ||| ||||||| |||| || ||| ||||||| |||||||||||||||| | |
|
|
| T |
46015355 |
aacatgcacttcatccatctgttatgatgtacattttgagtttaaaaccatgtgaagataaaattcttgttgttttcctg-ttttatgaaaatgcaacct |
46015453 |
T |
|
| Q |
115 |
cttgattgagtgttaatatggacatg |
140 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
46015454 |
cttgattgagtgttaatatgcacatg |
46015479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 46020587 - 46020710
Alignment:
| Q |
15 |
aacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagtt |
114 |
Q |
| |
|
|||||| |||| |||| |||||||||||||| || ||| |||||||| ||| |||||||||||| |||||| |||||| ||||||||||||||||| | |
|
|
| T |
46020587 |
aacatgcacttaatccatctgttatgatttaccttatgagtttaaaaccatgtgaagatacaattctttttgttttcct-tttttatgaaaatgcaacct |
46020685 |
T |
|
| Q |
115 |
cttgattgagtgttaatatggacat |
139 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
46020686 |
cttgattgagtgttaatatgcacat |
46020710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 46303900 - 46303777
Alignment:
| Q |
15 |
aacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagtt |
114 |
Q |
| |
|
|||||| | ||| |||| ||||||||||||| |||||||||||||||||||| ||||| |||||| ||| ||||||||| |||||| | |||||||| | |
|
|
| T |
46303900 |
aacatgcatttcatccatctgttatgatttagattttgactttaaaactatgtgaagacacaattctttatgctttcct-attttattacaatgcaagct |
46303802 |
T |
|
| Q |
115 |
cttgattgagtgttaatatggacat |
139 |
Q |
| |
|
||||||| ||||||||||| |||| |
|
|
| T |
46303801 |
cttgattttgtgttaatatgcacat |
46303777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 41074446 - 41074537
Alignment:
| Q |
41 |
atttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatat |
133 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||||| |||||||||| || ||||| |||||||| || |||||||| ||||||||||| |
|
|
| T |
41074446 |
atttagattttgactttaaaaccatgtgaagatacaattctttttgctttaatg-ttttaagaaaatgctaggtcttgatttagtgttaatat |
41074537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 46246346 - 46246223
Alignment:
| Q |
15 |
aacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagtt |
114 |
Q |
| |
|
|||||| |||| |||| |||||||||||||| || | | |||||||| || |||||||||||| ||||| |||||| ||||||||||||||||| | |
|
|
| T |
46246346 |
aacatgcacttaatccatctgttatgatttaccttataagtttaaaaccttgtgaagatacaattcttttttttttcct-tttttatgaaaatgcaacct |
46246248 |
T |
|
| Q |
115 |
cttgattgagtgttaatatggacat |
139 |
Q |
| |
|
||||||||| |||||||||| |||| |
|
|
| T |
46246247 |
cttgattgaatgttaatatgcacat |
46246223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 46021260 - 46021381
Alignment:
| Q |
15 |
aacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagtt |
114 |
Q |
| |
|
|||||| ||| | |||| ||||||||||||| ||| |||||||||| || ||||| |||||| ||| |||||||||| |||||| |||||||| | |
|
|
| T |
46021260 |
aacatgcactccatccatctgttatgatttagatt--gactttaaaatcatttgaagacacaattctttctgctttcctg-ttttatagaaatgcaacct |
46021356 |
T |
|
| Q |
115 |
cttgattgagtgttaatatggacat |
139 |
Q |
| |
|
||||||||| |||||||||| |||| |
|
|
| T |
46021357 |
cttgattgaatgttaatatgcacat |
46021381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 14320585 - 14320676
Alignment:
| Q |
38 |
atgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaa |
130 |
Q |
| |
|
|||||||| || || ||| || ||| ||| |||||||||||| ||||||||||||| |||||||| ||||||| || ||||||| |||||| |
|
|
| T |
14320585 |
atgatttagatattaactgtagaaccatgtgaagatacaattcattttgctttcctg-ttttatgagaatgcaatctcatgattgattgttaa |
14320676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 14321753 - 14321844
Alignment:
| Q |
38 |
atgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaa |
130 |
Q |
| |
|
|||||||| || || ||| || ||| ||| |||||||||||| ||||||||||||| ||| |||||||||||| || ||||||| |||||| |
|
|
| T |
14321753 |
atgatttagatattaactgtagaaccatgggaagatacaattcattttgctttcctg-tttcatgaaaatgcaatctcatgattgattgttaa |
14321844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 4523012 - 4522907
Alignment:
| Q |
33 |
ctgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaata |
132 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| ||||| |||||| |||||||||||||| |||||||||||| |||| ||||||||||||||||| | |
|
|
| T |
4523012 |
ctgttatgatttagattttgactttaaaaccatgtgaagacacaattctttttgctttcctg-ttttatgaaaattcaagctcttgattgagtgttaaaa |
4522914 |
T |
|
| Q |
133 |
tggacat |
139 |
Q |
| |
|
|| |||| |
|
|
| T |
4522913 |
tgcacat |
4522907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 4525394 - 4525280
Alignment:
| Q |
22 |
acttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgatt |
121 |
Q |
| |
|
||||| |||| |||||||||| || ||||||||||||||| ||| ||||| ||||| ||||||||||| |||||| ||||||| |||| |||||||| |
|
|
| T |
4525394 |
acttcatccatctgttatgatctaggttttgactttaaaaccatgtgaaga--caattctttttgctttcttgtttt-atgaaaaatcaagctcttgatt |
4525298 |
T |
|
| Q |
122 |
gagtgttaatatggacat |
139 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
4525297 |
gagtgttaatatgcacat |
4525280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 3802284 - 3802180
Alignment:
| Q |
34 |
tgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatat |
133 |
Q |
| |
|
|||||||||||| |||| ||||||||||| ||| |||| |||||||| |||||||||||| |||||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
3802284 |
tgttatgatttagatttcgactttaaaaccatgtgaagctacaattagttttgctttcct-attttatgaaaatacaacctcttgtttgagtgttaatat |
3802186 |
T |
|
| Q |
134 |
ggacat |
139 |
Q |
| |
|
| |||| |
|
|
| T |
3802185 |
gcacat |
3802180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 3802716 - 3802619
Alignment:
| Q |
41 |
atttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatatggacat |
139 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
3802716 |
atttagattttgactttaaaatcatgtgaagatacaattcgttttgttttcctatttt-atgaaaatgcaacctcttgattgagtgttaatatgcacat |
3802619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 50668519 - 50668681
Alignment:
| Q |
38 |
atgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatatggac |
137 |
Q |
| |
|
|||||||| |||||||||||| || ||| ||| ||| |||| |||||||||| ||| ||| ||||||||||||| ||||||| ||||||||||||| || |
|
|
| T |
50668519 |
atgatttagattttgactttagaagcatgtgaaaatagaattctttttgctttactgcttt-atgaaaatgcaagctcttgatcgagtgttaatatgcac |
50668617 |
T |
|
| Q |
138 |
a---------tgtgtttatcttgccattgttgccaggcttgggaaattcaacccatttcattct |
192 |
Q |
| |
|
| | |||||||||||| ||||||| ||| ||||| ||||| | ||||||||||||| |
|
|
| T |
50668618 |
ataagttggttatgtttatcttgctattgttgtcagacttggaaaattgagcccatttcattct |
50668681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 50668040 - 50668152
Alignment:
| Q |
22 |
acttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaa-ttatttttgctttcctgtttttatgaaaatgcaagttcttgat |
120 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||||||| ||| ||| |||||||||| || ||||||||| ||| |||||||||||||||| |||| || |
|
|
| T |
50668040 |
acttcgtccatatgtcatgatttaaattttgactttagaaccatgtgaagatacaatttttttttgcttcactg-ctttatgaaaatgcaagctcttaat |
50668138 |
T |
|
| Q |
121 |
tgagtgttaatatg |
134 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
50668139 |
tgaatgttaatatg |
50668152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 3801818 - 3801740
Alignment:
| Q |
15 |
aacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcct |
93 |
Q |
| |
|
|||||| | ||| |||| ||||||||||||| |||||||||||||||| ||| ||||| |||||| ||| ||||||||| |
|
|
| T |
3801818 |
aacatgcatttcatccatctgttatgatttagattttgactttaaaaccatgtgaagacacaattctttatgctttcct |
3801740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 3804175 - 3804128
Alignment:
| Q |
15 |
aacatgtacttcgtccaactgttatgatttacattttgactttaaaac |
62 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||| |||||||||||||||| |
|
|
| T |
3804175 |
aacatgcacttcatccatctgttatgatttaaattttgactttaaaac |
3804128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 52806429 - 52806350
Alignment:
| Q |
40 |
gatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttga |
119 |
Q |
| |
|
|||||| |||||||||||| ||| ||| |||||| ||||| ||||| ||||| |||||||||||| ||| ||| |||||| |
|
|
| T |
52806429 |
gatttagattttgactttagaacaatgtgaagatgcaattcttttttctttcttgtttttatgaacatggaagctcttga |
52806350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 5806 - 5721
Alignment:
| Q |
36 |
ttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattg |
122 |
Q |
| |
|
||||||||||||| ||||||||| |||| || | |||||||||| |||||| |||| || ||||||||||||| || ||||||||| |
|
|
| T |
5806 |
ttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttg-ttttatgaaaatgaaaactcttgattg |
5721 |
T |
|
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Target: scaffold0079 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 8018 - 7947
Alignment:
| Q |
36 |
ttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatg |
108 |
Q |
| |
|
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|
|
| T |
8018 |
ttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttg-ttttatgaaaatg |
7947 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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