View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10839_low_4 (Length: 388)
Name: NF10839_low_4
Description: NF10839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10839_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 372
Target Start/End: Complemental strand, 6487543 - 6487182
Alignment:
| Q |
11 |
cataggtgttgaacatttaacaccatcaaactatatatcaagtcatttgaaacaagtcaaatcatcacttttgaaaatagggatcaaaactacactatct |
110 |
Q |
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| T |
6487543 |
cataggtgttgaacatttaacaccatcaaactatatatcaagtcatttgaaacaagtcaaatcatcacttttgaaaatagggatcaaaactacactatct |
6487444 |
T |
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| Q |
111 |
attgctatatttcacttgcattgcatttttggggtaaattactagccgtatggttaaaatgctaattaataatttataccttaaaatagcactcaaaggc |
210 |
Q |
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| T |
6487443 |
attgctatctttcacttgcattgcatttttggggtaaattactagccgtatggttaaaatgctaattaataatttataccttaaaatagcactcaaaggc |
6487344 |
T |
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| Q |
211 |
aacaaattaagaccacacgaagtgtaataacaagagccaattaatttttgtaccaattgaagcaatcctatattttaccaaggaaaaccgaatatctagg |
310 |
Q |
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| T |
6487343 |
aacaaattaagaccacacgaagtgtaataacaagagccaattaattcttgtaccaattgaagcaatcctatattttaccaaggaaaaccgaatatctagg |
6487244 |
T |
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| Q |
311 |
acccaaaattataattttgtaagaacctcttaaagaaatggatttgttctacgtgtccatac |
372 |
Q |
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| T |
6487243 |
acccaaaattataattttgtaagaacctcttaaagaaatggatttgttttacgtgtccatac |
6487182 |
T |
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