View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10839_low_6 (Length: 363)
Name: NF10839_low_6
Description: NF10839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10839_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 31214757 - 31214448
Alignment:
| Q |
19 |
actacgaagaaaatctccaattacttccatcgagttgttgttgnnnnnnncgaaaaagaaattgttatgtaatatgtgaagtgaagaaaagggaatataa |
118 |
Q |
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| T |
31214757 |
actacgaagaaaatctccaattacttccatcgagttgttgttgtttttttggaaaaagaaattgttatgtaatatgtgaagtgaagaaaagggaatataa |
31214658 |
T |
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| Q |
119 |
taaattgtgatgtaggtgtggcttttgttgaaatgaaatgaaatgtgcaacaagtttagttagggggttgatttgtgaatgtgtgtgatatttgatttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31214657 |
taaattgtgatgtaggtgtggcttttgttgaaatgaaatgaaatgtgcaacaagtttagttagggggttgatttgtgaatgtgtgtgatatttgatttga |
31214558 |
T |
|
| Q |
219 |
tttggtttcaatgcgtatattaaacttttttcaattcaattggtatggtttggagaattgcatttttgatgatatcatgattcgatcttacattgcattc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31214557 |
tttggtttcaatgcgtatattaaacttttttcaattcaattggtatggtttggagaattgcatttttgatgatatcatgattcgatcttacattgcattc |
31214458 |
T |
|
| Q |
319 |
gttagttcat |
328 |
Q |
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|||||||||| |
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| T |
31214457 |
gttagttcat |
31214448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 30499069 - 30499375
Alignment:
| Q |
19 |
actacgaagaaaatctccaattacttccatcgagttgttgttgnnnnnnncgaaaaagaaattgttatgtaatatgtgaagtgaagaaaagggaatataa |
118 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
30499069 |
actacgaagaaaatctccaattacttccatagagtagttgttgtttttttcgaaaaagaaattgtaatgtaatatatgaagtgaagaaaagggaatataa |
30499168 |
T |
|
| Q |
119 |
taaattgtgatgtaggtgtggcttttgttgaaatgaaatgaaatgtgcaacaagtttagttagggggttgatttgtgaatgtgtgtgatatttgatttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
30499169 |
taaattgtgatgtaggtgtggcttttgttgaaatgaaatgaaatgtgcaag----ttggttagagggttgaattgtgaatgtgtgtgatatttgatttga |
30499264 |
T |
|
| Q |
219 |
tttggtttcaatgcgtatattaaactttttt-caattcaattggtatggtttggagaattgcatttttgatgatatcatgattcgatcttac-----att |
312 |
Q |
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||| ||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
30499265 |
ttt-----caatgcgtataataaactttttttcatttcaattggtaaggtttggagaattgcatttttgatgatatcatgatttgatcttacattacatt |
30499359 |
T |
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| Q |
313 |
gcattcgttagttcat |
328 |
Q |
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|||||||||||||||| |
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| T |
30499360 |
gcattcgttagttcat |
30499375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 48671518 - 48671477
Alignment:
| Q |
19 |
actacgaagaaaatctccaattacttccatcgagttgttgtt |
60 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
48671518 |
actacgaagaaagtcttcaattacttccatcgagttgttgtt |
48671477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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