View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10839_low_9 (Length: 287)
Name: NF10839_low_9
Description: NF10839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10839_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 32376290 - 32376560
Alignment:
| Q |
1 |
caatcgcggcacgaacgccataaccggatttcaaacccgtgttatcatcaacatcttctacgtctgattcagagtctccttccctatcattcccttcaat |
100 |
Q |
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|||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32376290 |
caattgcggcacgaacaccataaccggatttcaaacccgcgttatcatcaacatcttctacgtctgattcagaatctccttccctatcattcccttcaat |
32376389 |
T |
|
| Q |
101 |
ttcgggtaaccttgcatatactgcttgaataagctcatgcattgtgtaccttgcacttctttgtagtaaatctcctctgcccacagattgttgcacaact |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376390 |
ttcaggtaaccttgcatatactgcttgaataagctcatgcattgtgtaccttgcacttctttgtagtaaatctcctctgcccacagattgttgcacaact |
32376489 |
T |
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| Q |
201 |
tgaaaacatgcattcacaagtgtgcaaacagcttgatcagagagtaatactgaagctttatggtgcattat |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376490 |
tgaaaacatgcattcacaagtgtgcaaacagcttgatcagagagtaatactgaagctttatggtgcattat |
32376560 |
T |
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Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 94 - 269
Target Start/End: Complemental strand, 23572437 - 23572262
Alignment:
| Q |
94 |
cttcaatttcgggtaaccttgcatatactgcttgaataagctcatgcattgtgtaccttgcacttctttgtagtaaatctcctctgcccacagattgttg |
193 |
Q |
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|||||||||| |||||||| ||| |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
23572437 |
cttcaatttcaggtaacctagcaaatactgcttgaataagctcaagcatcgtgtaccttgaacttctttgtagtaaatctcctctgttcacagattgttg |
23572338 |
T |
|
| Q |
194 |
cacaacttgaaaacatgcattcacaagtgtgcaaacagcttgatcagagagtaatactgaagctttatggtgcatt |
269 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||||| |
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| T |
23572337 |
cacaacttgaaaacatgcatccacaagtgtgcaaacagcttgatcagtgagtaaaattgaagctttatggtgcatt |
23572262 |
T |
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