View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10840_high_5 (Length: 236)
Name: NF10840_high_5
Description: NF10840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10840_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 55228978 - 55228757
Alignment:
| Q |
1 |
agtaaccaattccaatgaaactcgtgaaggtggttccaaagattttagtttctctggcaatccccttcctctccacaacaaagaaatagatactagtagc |
100 |
Q |
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| T |
55228978 |
agtaaccaattccaatgaaactcatgaaggtggttccaaagattttagtttctctggtaatccccttcctctccacaacaaagaaatagatactagtagc |
55228879 |
T |
|
| Q |
101 |
gaaggagaggcagatagtgtcagtgttgtatctgaatcccgtgtttcaattggaaaatacaatgtgaaagaaagttttggttccatcctacaaacaatag |
200 |
Q |
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| T |
55228878 |
gaaggagaggcagatagtgtcagtgttgtatctgaatcccgtgtttcaattggaaaatacaatgtgaaagaaagttttggttccatcctacaaacaatag |
55228779 |
T |
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| Q |
201 |
ttgacaagtatggtgatatagg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
55228778 |
ttgacaagtatggtgatatagg |
55228757 |
T |
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Back To:
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 50996452 - 50996380
Alignment:
| Q |
150 |
ttggaaaatacaatgtgaaagaaagttttggttccatcctacaaacaatagttgacaagtatggtgatatagg |
222 |
Q |
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||||||||||| ||||||| ||||| |||| | ||||||| ||| | || |||||||||||||||||||||| |
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| T |
50996452 |
ttggaaaataccatgtgaaggaaagctttgctcccatcctgcaatccatctttgacaagtatggtgatatagg |
50996380 |
T |
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