View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10840_high_6 (Length: 215)
Name: NF10840_high_6
Description: NF10840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10840_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 32558048 - 32557861
Alignment:
| Q |
11 |
agcagagatacgcgatccttcaacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagccgcacgtggc |
110 |
Q |
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| T |
32558048 |
agcagagatacgcgatccttcaacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagccgcacgtggc |
32557949 |
T |
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| Q |
111 |
atgcgtggctcacgtgctcgtaccaattttgtttaccatgatacccctcctggttcttctgttactccaatcctctcacccgaccaac |
198 |
Q |
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| T |
32557948 |
atgcgtggctcacgtgctcgtaccaattttgtttaccatgatacccctcctggttcttctgttactccaatcctctcacctgaccaac |
32557861 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 6507735 - 6507659
Alignment:
| Q |
24 |
gatccttcaacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagc |
100 |
Q |
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|||||| |||| ||||||||||| |||||||||||||| || |||||| ||||||| ||||| ||||| || ||||| |
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| T |
6507735 |
gatcctgcaactaaagaaagacattggttaggaacatttgatactgctcaagaagctgcttttgcttatgatagagc |
6507659 |
T |
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