View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10840_low_12 (Length: 219)

Name: NF10840_low_12
Description: NF10840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10840_low_12
NF10840_low_12
[»] chr3 (2 HSPs)
chr3 (18-206)||(17265480-17265668)
chr3 (83-159)||(18866058-18866134)
[»] chr7 (2 HSPs)
chr7 (83-158)||(25879981-25880056)
chr7 (99-159)||(38175520-38175580)
[»] chr1 (1 HSPs)
chr1 (99-159)||(34286798-34286858)
[»] chr4 (1 HSPs)
chr4 (101-159)||(32576327-32576385)
[»] chr6 (1 HSPs)
chr6 (99-159)||(10280706-10280766)
[»] chr2 (1 HSPs)
chr2 (90-158)||(13565752-13565820)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 17265668 - 17265480
Alignment:
Q  18 agaccatgactaacatcgcccgttagaagaggatggcggtagatcctaatatgcctaagagaggaagggaatgtgtcccatcatcgttgttatgaacact 117  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17265668 agaccatgactaacagcgcccgttggaagaggatggcggcagatcctaatatgcctaagagaggaagggaatgtgtcccatcatctttgttatgaacact 17265569  T
Q  118 ttccttttcatcgtcactcatcttaaaaactcaacaaagaacaaatgaaaaagttatgtgccagatctgaaaaatacgatgttgttttt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||||||||||    
T  17265568 ttccttttcatcgtcactcatcttaaaaactcaacaaagaacaaatgaaaaagttatgcgacaggtctggaaaatacgatgttgttttt 17265480  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 18866134 - 18866058
Alignment:
Q  83 agggaatgtgtcccatcatcgttgttatgaacactttccttttcatcgtcactcatcttaaaaactcaacaaagaac 159  Q
    |||||| |||| ||| |||||||| | ||||||| |||  ||||||| |||||||||||||||||||||||||||||    
T  18866134 agggaaggtgttccaacatcgttgctgtgaacaccttcactttcatcatcactcatcttaaaaactcaacaaagaac 18866058  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 25880056 - 25879981
Alignment:
Q  83 agggaatgtgtcccatcatcgttgttatgaacactttccttttcatcgtcactcatcttaaaaactcaacaaagaa 158  Q
    |||||| |||| ||| |||||||||||||||||||||||  || ||| ||||||||||||||||||||||||||||    
T  25880056 agggaaggtgttccaacatcgttgttatgaacactttcccatttatcatcactcatcttaaaaactcaacaaagaa 25879981  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 38175520 - 38175580
Alignment:
Q  99 catcgttgttatgaacactttccttttcatcgtcactcatcttaaaaactcaacaaagaac 159  Q
    ||||||||| || ||||  |||| ||| ||| |||||||| ||||||||||||||||||||    
T  38175520 catcgttgtgatcaacaacttcccttttatcatcactcatattaaaaactcaacaaagaac 38175580  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 34286858 - 34286798
Alignment:
Q  99 catcgttgttatgaacactttccttttcatcgtcactcatcttaaaaactcaacaaagaac 159  Q
    |||||||||||||||||| |||  ||||||| |||||||||||||||||||||||||||||    
T  34286858 catcgttgttatgaacacattctctttcatcatcactcatcttaaaaactcaacaaagaac 34286798  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 32576327 - 32576385
Alignment:
Q  101 tcgttgttatgaacactttccttttcatcgtcactcatcttaaaaactcaacaaagaac 159  Q
    |||||||||||||||| |||  |||||||   |||||||||||||||||||||||||||    
T  32576327 tcgttgttatgaacacattctctttcatcactactcatcttaaaaactcaacaaagaac 32576385  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 10280766 - 10280706
Alignment:
Q  99 catcgttgttatgaacactttccttttcatcgtcactcatcttaaaaactcaacaaagaac 159  Q
    |||||||||| ||||||  |||| |||| || | |||||||||||||||||||||||||||    
T  10280766 catcgttgttttgaacatattccctttcgtcattactcatcttaaaaactcaacaaagaac 10280706  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 13565820 - 13565752
Alignment:
Q  90 gtgtcccatcatcgttgttatgaacactttccttttcatcgtcactcatcttaaaaactcaacaaagaa 158  Q
    ||||| || |||||||||||||||||| |||  |||||||    ||| |||||||||||||||||||||    
T  13565820 gtgtctcaacatcgttgttatgaacaccttctctttcatcactgctcgtcttaaaaactcaacaaagaa 13565752  T

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