View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10840_low_13 (Length: 217)
Name: NF10840_low_13
Description: NF10840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10840_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 34688983 - 34689181
Alignment:
| Q |
1 |
acacctctttactttaaagaatatatgttagcgttccaggactattgactagtcattcctctgaagcagctctttactttaaattctttactattgactg |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34688983 |
acacctctttactttaaagaatatatgttagcattccaggactattgactagtcattcctctgaagcagctctttactttaaattctttactattgactg |
34689082 |
T |
|
| Q |
101 |
aagcagttccttctgaaccgcatttataagctcaacaaccagtactgtattttctaaggatacataaaccataaactaacaccagaattgcatgctctg |
199 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34689083 |
aagcagttccctctgaaccgcatttataagctcaacaaccagtactgtattttctaaggatacataaaccataaactaacaccagaattgcatgctctg |
34689181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 34711395 - 34711593
Alignment:
| Q |
1 |
acacctctttactttaaagaatatatgttagcgttccaggactattgactagtcattcctctgaagcagctctttactttaaattctttactattgactg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34711395 |
acacctctttactttaaagaatatatgttagcattccaggactattgactagtcattcctctgaagcagctctttactttaaattctttactattgactg |
34711494 |
T |
|
| Q |
101 |
aagcagttccttctgaaccgcatttataagctcaacaaccagtactgtattttctaaggatacataaaccataaactaacaccagaattgcatgctctg |
199 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34711495 |
aagcagttccctctgaaccgcatttataagctcaacaaccagtactgtattttctaaggatacataaaccataaactaacaccagaattgcatgctctg |
34711593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 102
Target Start/End: Complemental strand, 34688934 - 34688906
Alignment:
| Q |
74 |
ttactttaaattctttactattgactgaa |
102 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34688934 |
ttactttaaattctttactattgactgaa |
34688906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 102
Target Start/End: Complemental strand, 34711346 - 34711318
Alignment:
| Q |
74 |
ttactttaaattctttactattgactgaa |
102 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34711346 |
ttactttaaattctttactattgactgaa |
34711318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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