View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10840_low_2 (Length: 433)

Name: NF10840_low_2
Description: NF10840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10840_low_2
NF10840_low_2
[»] chr8 (3 HSPs)
chr8 (18-426)||(43828543-43828951)
chr8 (59-426)||(43821118-43821485)
chr8 (186-426)||(43813959-43814199)
[»] chr6 (1 HSPs)
chr6 (262-416)||(31809825-31809979)


Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 43828543 - 43828951
Alignment:
Q  18 cctccgctgcatccaaccaactttgccgtcgtctttaggttcacttctgatcatttttaaaacatttttataagtccatttgatgtcacatgatgaaata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43828543 cctccgctgcatccaaccaactttgccgtcgtctttaggttcacttctgatcatttttaaaacatttttatgagtccatttgatgtcacatgatgaaata 43828642  T
Q  118 tcaaatagtttcaaaactttatggaaatttctggagttgatctacttgttaagaaaatttacctcttttcatactccatttgtcaatcctgggatataaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43828643 tcaaatagtttcaaaactttatggaaatttctggagttgatctacttgttaagaaaatttacctcttttcatactccatttgtcaatcctgggatataaa 43828742  T
Q  218 gcagttaaacaatctcctcctaaaccagccagatgctatggcaccttgttgttcaagggggtccttaaagttagctttctcacccaattcttcaaatgaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43828743 gcagttaaacaatctcctcctaaaccagccagatgctatggcaccttgttgttcaagggggtccttaaagttagctttctcacccaattcttcaaatgaa 43828842  T
Q  318 tccactaaattttgaagccttgctacaaattcaatcaatagtgatgtaaatgtcgttagagacaacgaacttgcactttcataagtttttgatacttcct 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43828843 tccactaaattttgaagccttgctacaaattcaatcaatagtgatgtaaatgtcgttagagacaacgaacttgcactttcataagtttttgatacttcct 43828942  T
Q  418 cctttgctt 426  Q
    | |||||||    
T  43828943 cttttgctt 43828951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 59 - 426
Target Start/End: Original strand, 43821118 - 43821485
Alignment:
Q  59 cacttctgatcatttttaaaacatttttataagtccatttgatgtcacatgatgaaatatcaaatagtttcaaaactttatggaaatttctggagttgat 158  Q
    |||||| |||||||||||||||||||| ||||||| |||||| || || ||||||| | |||||| ||||||||| ||| || ||||||  |||||||||    
T  43821118 cacttcggatcatttttaaaacattttcataagtctatttgaagttacttgatgaagtgtcaaattgtttcaaaagtttttgaaaatttgcggagttgat 43821217  T
Q  159 ctacttgttaagaaaatttacctcttttcatactccatttgtcaatcctgggatataaagcagttaaacaatctcctcctaaaccagccagatgctatgg 258  Q
     ||||   ||||||||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||  ||| ||||| |||||| || |  |    
T  43821218 ttactcaataagaaaatttacctcttttcatactccatttgtcaatcctaggatctgaagtagttaaacaatcttgtccaaaacccgccagaggccaccg 43821317  T
Q  259 caccttgttgttcaagggggtccttaaagttagctttctcacccaattcttcaaatgaatccactaaattttgaagccttgctacaaattcaatcaatag 358  Q
    | ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||  ||    
T  43821318 cgccttgtttttcaagggggtccttaaaattagctttctcacccaattcttcaaatgagtccactaaattttgaagccttgctacaaattctatcagaag 43821417  T
Q  359 tgatgtaaatgtcgttagagacaacgaacttgcactttcataagtttttgatacttcctcctttgctt 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  43821418 tgatgtaaatgtcgttagagacaacgaacttgcactttcataagtttttgattcttcctcttttgctt 43821485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 186 - 426
Target Start/End: Original strand, 43813959 - 43814199
Alignment:
Q  186 tcatactccatttgtcaatcctgggatataaagcagttaaacaatctcctcctaaaccagccagatgctatggcaccttgttgttcaagggggtccttaa 285  Q
    ||||||||||||| |||||||| |||| | ||||||||||| |||||  ||| |||||  || || | ||   ||| |||||||||||||||||||||||    
T  43813959 tcatactccatttttcaatcctaggatttgaagcagttaaataatctggtccaaaacccacccgaggttaccacactttgttgttcaagggggtccttaa 43814058  T
Q  286 agttagctttctcacccaattcttcaaatgaatccactaaattttgaagccttgctacaaattcaatcaatagtgatgtaaatgtcgttagagacaacga 385  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||    
T  43814059 agttagctttctcacccaattcttcaaatgcatccaccaaattttgaagccttgctacaaattcaatcaaaagtgatgtaaatgtagttagagacaatga 43814158  T
Q  386 acttgcactttcataagtttttgatacttcctcctttgctt 426  Q
    ||| ||||||||||||||||| ||| ||||||| |||||||    
T  43814159 actagcactttcataagttttcgattcttcctcttttgctt 43814199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 416
Target Start/End: Complemental strand, 31809979 - 31809825
Alignment:
Q  262 cttgttgttcaagggggtccttaaagttagctttctcacccaattcttcaaatgaatccactaaattttgaagccttgctacaaattcaatcaatagtga 361  Q
    ||||||||||||| ||||||||||| || ||||||||||| ||||||||||| ||||| || |  ||||| ||||| || |||||||||||||  |||||    
T  31809979 cttgttgttcaagagggtccttaaacttcgctttctcacctaattcttcaaaagaatcaacaaggttttgtagcctagccacaaattcaatcagaagtga 31809880  T
Q  362 tgtaaatgtcgttagagacaacgaacttgcactttcataagtttttgatacttcc 416  Q
    ||  ||||| |  | ||  |||||||| ||||||||||| ||||||||| |||||    
T  31809879 tgagaatgttgccaaagttaacgaactagcactttcataggtttttgattcttcc 31809825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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