View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10840_low_3 (Length: 430)

Name: NF10840_low_3
Description: NF10840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10840_low_3
NF10840_low_3
[»] chr4 (7 HSPs)
chr4 (1-390)||(23333640-23334030)
chr4 (57-204)||(13372883-13373031)
chr4 (57-204)||(13383084-13383232)
chr4 (79-211)||(17275025-17275158)
chr4 (1-34)||(13015486-13015519)
chr4 (57-141)||(15848540-15848623)
chr4 (3-39)||(18525421-18525457)
[»] chr8 (6 HSPs)
chr8 (82-282)||(10231519-10231721)
chr8 (94-147)||(20476254-20476307)
chr8 (96-160)||(31633821-31633885)
chr8 (127-320)||(31692451-31692646)
chr8 (3-36)||(3174787-3174820)
chr8 (3-39)||(43594297-43594333)
[»] chr3 (3 HSPs)
chr3 (117-307)||(27594822-27595015)
chr3 (70-166)||(16241925-16242022)
chr3 (96-168)||(13794829-13794902)
[»] scaffold0538 (2 HSPs)
scaffold0538 (57-211)||(2437-2592)
scaffold0538 (57-211)||(6793-6948)
[»] chr5 (6 HSPs)
chr5 (85-176)||(36537330-36537420)
chr5 (117-172)||(19585648-19585703)
chr5 (3-45)||(11352044-11352086)
chr5 (3-45)||(11375168-11375210)
chr5 (3-35)||(25627118-25627150)
chr5 (3-39)||(43442257-43442293)
[»] chr7 (3 HSPs)
chr7 (3-39)||(7721430-7721466)
chr7 (1-36)||(46572192-46572227)
chr7 (3-35)||(33222431-33222463)
[»] chr2 (3 HSPs)
chr2 (84-189)||(16717117-16717223)
chr2 (1-45)||(25931065-25931109)
chr2 (6-39)||(727619-727652)
[»] scaffold0074 (1 HSPs)
scaffold0074 (3-34)||(45743-45774)
[»] chr1 (4 HSPs)
chr1 (3-34)||(17745240-17745271)
chr1 (1-39)||(1600271-1600309)
chr1 (281-333)||(12125730-12125782)
chr1 (3-35)||(42858620-42858652)
[»] chr6 (1 HSPs)
chr6 (1-45)||(8268697-8268741)


Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 23334030 - 23333640
Alignment:
Q  1 aagtctcatgttcgattctctctggtgtcaatttggatgagttaaagtggttcaccccaatcatcctcactatggggaacgtccactcttcgtagaaaaa 100  Q
    ||||||| ||||||||| ||||||||||||||||||| |   ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  23334030 aagtctcgtgttcgattatctctggtgtcaatttggacggactaaagtggtttcgcccaatcatcctcactatggggaacgtccactcttcgtagaaaaa 23333931  T
Q  101 tctacggtcttccacaatgattgaatgtttgcacgatgtgcaacaaggtttgattacaagtaattaacgaatcttgtaactctctaacccaaagatgacc 200  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23333930 tctacaatcttccacaatgattgaatgtttgcacgatgtgcaacaaggtttgattacaagtaattaacgaatcttgtaactctttaacccaaagatgacc 23333831  T
Q  201 aaggccctaaattgctcatatcaagatcatctttaacttgatataaa-ttgatatccacaaatttgatacctcaaaccttcaatcttgaatcctatgaga 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23333830 aaggccctaaattgctcatatcaagatcatctttaacttgatataaatttgatatccacaaatttgatacctcaaaacttcaatcttgaatcctatgaga 23333731  T
Q  300 tccttcagcaatcttcgtcaatattgcttcttctgcgtaggttccttcgatgttgatgaattagaaaataaaaaaccctagcttgtagagg 390  Q
    |||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||  |||||| |||||||||||||||    
T  23333730 tccttcggcaatcttcgtcaagattgcttcttctgcataagttccttcgatgttgatgaattagaaagaaaaaaaacctagcttgtagagg 23333640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 13373031 - 13372883
Alignment:
Q  57 ccaatcatcctcactatggggaacgtccactcttcgtagaaaaatctacggtcttccacaatgattgaatgtttgcacgatgtgcaacaaggtttgatta 156  Q
    ||||||||| ||||| ||||| ||||| ||||||| |||||||||||| |  | |||||  ||||||||| ||||||| |||||| |||  ||||||||     
T  13373031 ccaatcatcgtcactttggggtacgtctactcttcatagaaaaatctatgaccgtccactttgattgaatctttgcactatgtgctacagtgtttgattt 13372932  T
Q  157 caagtaattaacgaatcttgtaactctct-aacccaaagatgaccaagg 204  Q
    |||  |||||||||||||||| ||||| | || | ||||||||||||||    
T  13372931 caatcaattaacgaatcttgtcactctataaatcaaaagatgaccaagg 13372883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 13383232 - 13383084
Alignment:
Q  57 ccaatcatcctcactatggggaacgtccactcttcgtagaaaaatctacggtcttccacaatgattgaatgtttgcacgatgtgcaacaaggtttgatta 156  Q
    ||||||||| ||||| ||||| ||||| ||||||| |||||||||||| |  | |||||  ||||||||| ||||||| |||||| |||  ||||||||     
T  13383232 ccaatcatcgtcactttggggtacgtctactcttcatagaaaaatctatgaccgtccactttgattgaatctttgcactatgtgctacagtgtttgattt 13383133  T
Q  157 caagtaattaacgaatcttgtaactctct-aacccaaagatgaccaagg 204  Q
    |||  |||||||||||||||| ||||| | || | ||||||||||||||    
T  13383132 caatcaattaacgaatcttgtcactctataaatcaaaagatgaccaagg 13383084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 17275158 - 17275025
Alignment:
Q  79 acgtccactcttcgtagaaaaatctacggtcttccacaatgattgaatgtttgcacgatgtgcaacaaggtttgattacaagtaattaacgaatcttgta 178  Q
    |||| |||||||||||||||||  || || ||||    |||||||||||||||||| | || | |||||||||||| |||||||||||||||| |||||     
T  17275158 acgttcactcttcgtagaaaaacatatggccttcttatatgattgaatgtttgcacaaagttctacaaggtttgataacaagtaattaacgaagcttgtg 17275059  T
Q  179 actctctaaccc-aaagatgaccaaggccctaaa 211  Q
    ||||| || ||| |||||| |||||| |||||||    
T  17275058 actctttagccctaaagatcaccaagaccctaaa 17275025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 13015486 - 13015519
Alignment:
Q  1 aagtctcatgttcgattctctctggtgtcaattt 34  Q
    |||||||||||||||||||||| |||||||||||    
T  13015486 aagtctcatgttcgattctctcaggtgtcaattt 13015519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 15848540 - 15848623
Alignment:
Q  57 ccaatcatcctcactatggggaacgtccactcttcgtagaaaaatctacggtcttccacaatgattgaatgtttgcacgatgtgc 141  Q
    ||||||||||||  ||||||| | || || |||| || |||||||||| |||||||||| ||||||||||| ||| |||| ||||    
T  15848540 ccaatcatcctcgatatggggtatgtgcattctt-gtggaaaaatctatggtcttccactatgattgaatgcttggacgaagtgc 15848623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 18525421 - 18525457
Alignment:
Q  3 gtctcatgttcgattctctctggtgtcaatttggatg 39  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  18525421 gtctcatgttcgattctctccggtgtcaatttagatg 18525457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 82 - 282
Target Start/End: Original strand, 10231519 - 10231721
Alignment:
Q  82 tccactcttcgtagaaaaatctacggtcttccacaatgattgaatgtttgcacgatgtgcaacaaggtttgattacaagtaattaacgaatcttgtaact 181  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||||||||||||  ||||| |||| ||||||||||||| |||||||||||  ||| |||    
T  10231519 tccactctttgtagaaaaatccacggtcttccactatgattgaatgtttgcacagtgtgctacaacgtttgattacaagcaattaacgaattatgtcact 10231618  T
Q  182 ctctaacc-caaagatgaccaaggccctaaattgctcatatcaagatcatctttaacttgatataaat-tgatatccacaaatttgatacctcaaacctt 279  Q
    || |||||  |||||| ||||||| |||||| |     ||||||||| | || |||||||||  |||| ||| ||||||||||||||||| |||| ||||    
T  10231619 ctttaacctaaaagattaccaaggtcctaaactatgtgtatcaagattacctataacttgatccaaatctgagatccacaaatttgatacttcaaccctt 10231718  T
Q  280 caa 282  Q
    |||    
T  10231719 caa 10231721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 20476307 - 20476254
Alignment:
Q  94 agaaaaatctacggtcttccacaatgattgaatgtttgcacgatgtgcaacaag 147  Q
    |||||||||||||||||||||| || ||||||| |||||| ||||||| |||||    
T  20476307 agaaaaatctacggtcttccactattattgaatttttgcatgatgtgctacaag 20476254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 31633821 - 31633885
Alignment:
Q  96 aaaaatctacggtcttccacaatgattgaatgtttgcacgatgtgcaacaaggtttgattacaag 160  Q
    ||||||| |||  ||||||| ||||||||| |||||||| |||||| |||||||||||| |||||    
T  31633821 aaaaatccacgaccttccactatgattgaaagtttgcacaatgtgctacaaggtttgatgacaag 31633885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 320
Target Start/End: Complemental strand, 31692646 - 31692451
Alignment:
Q  127 gtttgcacgatgtgcaacaaggtttgattacaagtaattaacgaatcttgtaactctctaacccaaagatgaccaaggccctaaat-tgctcatatcaag 225  Q
    |||||||| | |||| |||||  ||||| |||||  |||||||||| |||| ||||| |||||||||||||||||    | ||||| | || ||  ||||    
T  31692646 gtttgcacaacgtgctacaagacttgatcacaagccattaacgaatattgtcactctttaacccaaagatgaccataatcttaaatctacttattgcaag 31692547  T
Q  226 atcatctttaacttgatataaattgatatccacaaatttgatacctcaaaccttc-aatcttgaatcctatgagatccttcagcaatcttcgtcaa 320  Q
    |||  || ||||||||| ||||||   |||||| |||||||  ||| || | ||| ||| || ||||||||||||||||||| |||||||| ||||    
T  31692546 atcgcctataacttgatctaaatttgaatccacgaatttgacgccttaaccattcaaattttcaatcctatgagatccttcaacaatcttcatcaa 31692451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 3174820 - 3174787
Alignment:
Q  3 gtctcatgttcgattctctctggtgtcaatttgg 36  Q
    |||||| |||||||||||||||||||||||||||    
T  3174820 gtctcaggttcgattctctctggtgtcaatttgg 3174787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 43594333 - 43594297
Alignment:
Q  3 gtctcatgttcgattctctctggtgtcaatttggatg 39  Q
    |||||| |||||||||||||| |||||||||||||||    
T  43594333 gtctcaggttcgattctctctagtgtcaatttggatg 43594297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 117 - 307
Target Start/End: Original strand, 27594822 - 27595015
Alignment:
Q  117 atgattgaatgtttgcacgatgtgcaacaaggtttgattacaagtaattaacgaatcttgtaactctctaacccaaagatgaccaaggccctaaat-tgc 215  Q
    |||||||||||||   || |||| | ||||||||||||||||||||||||||||||||| | ||||| ||| ||||||||||||||  |||||||| | |    
T  27594822 atgattgaatgttattacaatgtactacaaggtttgattacaagtaattaacgaatcttatcactctttaatccaaagatgaccaaaaccctaaatctac 27594921  T
Q  216 tcatatcaagatcatctttaacttgatataaat-tgatatccacaaatttgatacctcaaacctt-caatcttgaatcctatgagatccttcag 307  Q
    |  || ||||| || || ||||||||| |||||  || |||||  ||||| ||||||||| ||||  |||||| |||| |||||||||||||||    
T  27594922 ttgtagcaagaccacctctaacttgatgtaaatccgagatccatgaatttaatacctcaacccttaaaatctttaatcatatgagatccttcag 27595015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 16241925 - 16242022
Alignment:
Q  70 ctatggggaacgtccactcttcgtagaaaaatctacggtcttccacaatgattgaatgtttgcac-gatgtgcaacaaggtttgattacaagtaatta 166  Q
    |||||||| |||||| ||||||||||||||||||| |  ||||||| ||||||||||||||||||  | |||  ||| |||||||||| |||||||||    
T  16241925 ctatggggtacgtcctctcttcgtagaaaaatctatgaccttccactatgattgaatgtttgcacacaagtgtcacatggtttgattataagtaatta 16242022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 13794829 - 13794902
Alignment:
Q  96 aaaaatctacggtcttccacaatgattgaatgtttgcacg-atgtgcaacaaggtttgattacaagtaattaac 168  Q
    |||||||||||   |||||| |||| |||||||||||||  | |||| ||||||||||||||||||||||||||    
T  13794829 aaaaatctacgactttccactatgaatgaatgtttgcacccaagtgctacaaggtttgattacaagtaattaac 13794902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0538 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0538
Description:

Target: scaffold0538; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 2437 - 2592
Alignment:
Q  57 ccaatcatcctcactatggggaacgtccactcttcgtagaaaaatctacggtcttccacaatgattgaatgtttgcacgatgtgcaacaaggtttgatta 156  Q
    ||||||||||||||| ||||| ||||| ||||||| |||||||||| | |  | |||||  ||| ||||| ||||||| ||| || |||| |||||||||    
T  2437 ccaatcatcctcactttggggtacgtctactcttcatagaaaaatcaatgaccgtccactttgaatgaatctttgcactatgcgctacaatgtttgatta 2536  T
Q  157 caagtaattaacgaatcttgtaactctct-aacccaaagatgaccaaggccctaaa 211  Q
    |||  |||||||||||||||| | ||| | |||| |||||||||||| ||||||||    
T  2537 caatcaattaacgaatcttgtcattctttaaaccaaaagatgaccaatgccctaaa 2592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0538; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 6793 - 6948
Alignment:
Q  57 ccaatcatcctcactatggggaacgtccactcttcgtagaaaaatctacggtcttccacaatgattgaatgtttgcacgatgtgcaacaaggtttgatta 156  Q
    ||||||||||||||| ||||| ||||| ||||||| |||||||||| | |  | |||||  ||| ||||| ||||||| ||| || |||| |||||||||    
T  6793 ccaatcatcctcactttggggtacgtctactcttcatagaaaaatcaatgaccgtccactttgaatgaatctttgcactatgcgctacaatgtttgatta 6892  T
Q  157 caagtaattaacgaatcttgtaactctct-aacccaaagatgaccaaggccctaaa 211  Q
    |||  |||||||||||||||| | ||| | |||| |||||||||||| ||||||||    
T  6893 caatcaattaacgaatcttgtcattctttaaaccaaaagatgaccaatgccctaaa 6948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 36537330 - 36537420
Alignment:
Q  85 actcttcgtagaaaaatctacggtcttccacaatgattgaatgtttgcacgatgtgcaacaaggtttgattacaagtaattaacgaatcttg 176  Q
    ||||||||||||||| |||||| |||||||| ||||||||||||||||||  ||||| | ||||||||||||||||||||||| ||| ||||    
T  36537330 actcttcgtagaaaa-tctacgatcttccactatgattgaatgtttgcacagtgtgctaaaaggtttgattacaagtaattaatgaagcttg 36537420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 19585703 - 19585648
Alignment:
Q  117 atgattgaatgtttgcacgatgtgcaacaaggtttgattacaagtaattaacgaat 172  Q
    |||||||||||||| || || |||| ||||||| ||||||||||||||||||||||    
T  19585703 atgattgaatgttttcatgaagtgctacaaggtgtgattacaagtaattaacgaat 19585648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 11352044 - 11352086
Alignment:
Q  3 gtctcatgttcgattctctctggtgtcaatttggatgagttaa 45  Q
    |||||| |||||||||||||  |||||||||||||||||||||    
T  11352044 gtctcaagttcgattctctccagtgtcaatttggatgagttaa 11352086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11375210 - 11375168
Alignment:
Q  3 gtctcatgttcgattctctctggtgtcaatttggatgagttaa 45  Q
    |||||| ||||||||||||| | ||||||||||||||||||||    
T  11375210 gtctcaagttcgattctctccgatgtcaatttggatgagttaa 11375168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 25627118 - 25627150
Alignment:
Q  3 gtctcatgttcgattctctctggtgtcaatttg 35  Q
    |||||| ||||||||||||||||||||||||||    
T  25627118 gtctcaggttcgattctctctggtgtcaatttg 25627150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 43442257 - 43442293
Alignment:
Q  3 gtctcatgttcgattctctctggtgtcaatttggatg 39  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  43442257 gtctcaggttcgattctctctgttgtcaatttggatg 43442293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 7721430 - 7721466
Alignment:
Q  3 gtctcatgttcgattctctctggtgtcaatttggatg 39  Q
    |||||||||||||||||||||||||||||||||||||    
T  7721430 gtctcatgttcgattctctctggtgtcaatttggatg 7721466  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 46572227 - 46572192
Alignment:
Q  1 aagtctcatgttcgattctctctggtgtcaatttgg 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  46572227 aagtatcatgttcgattctctctggtgtcaatttgg 46572192  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 33222431 - 33222463
Alignment:
Q  3 gtctcatgttcgattctctctggtgtcaatttg 35  Q
    |||||| ||||||||||||||||||||||||||    
T  33222431 gtctcaggttcgattctctctggtgtcaatttg 33222463  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 189
Target Start/End: Complemental strand, 16717223 - 16717117
Alignment:
Q  84 cactcttcgtagaaaaatctacggtcttccacaatgattgaatgtttgcacgat-gtgcaacaaggtttgattacaagtaattaacgaatcttgtaactc 182  Q
    ||||||| |||||||| |||||||||||||||  || ||||||||||||||  |  ||  | |||||||||||||||||| |||| ||| ||||| ||||    
T  16717223 cactctttgtagaaaattctacggtcttccactttgcttgaatgtttgcacactaatgttataaggtttgattacaagtagttaatgaagcttgtgactc 16717124  T
Q  183 tctaacc 189  Q
    | |||||    
T  16717123 tttaacc 16717117  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25931065 - 25931109
Alignment:
Q  1 aagtctcatgttcgattctctctggtgtcaatttggatgagttaa 45  Q
    ||||||||  ||||||||||| |||||||||||||||||||||||    
T  25931065 aagtctcagattcgattctctttggtgtcaatttggatgagttaa 25931109  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 727652 - 727619
Alignment:
Q  6 tcatgttcgattctctctggtgtcaatttggatg 39  Q
    |||||||||||||||||||||| |||||||||||    
T  727652 tcatgttcgattctctctggtgccaatttggatg 727619  T

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Target: scaffold0074 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 45774 - 45743
Alignment:
Q  3 gtctcatgttcgattctctctggtgtcaattt 34  Q
    ||||||||||||||||||||||||||||||||    
T  45774 gtctcatgttcgattctctctggtgtcaattt 45743  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 17745271 - 17745240
Alignment:
Q  3 gtctcatgttcgattctctctggtgtcaattt 34  Q
    ||||||||||||||||||||||||||||||||    
T  17745271 gtctcatgttcgattctctctggtgtcaattt 17745240  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1600309 - 1600271
Alignment:
Q  1 aagtctcatgttcgattctctctggtgtcaatttggatg 39  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  1600309 aagtttcaggttcgattctctctggtgtcaatttggatg 1600271  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 12125782 - 12125730
Alignment:
Q  281 aatcttgaatcctatgagatccttcagcaatcttcgtcaatattgcttcttct 333  Q
    |||||| |||||||||||||||||| ||||| ||| |||| ||| ||||||||    
T  12125782 aatcttcaatcctatgagatccttccgcaatattcttcaagattccttcttct 12125730  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 42858652 - 42858620
Alignment:
Q  3 gtctcatgttcgattctctctggtgtcaatttg 35  Q
    |||||| ||||||||||||||||||||||||||    
T  42858652 gtctcaggttcgattctctctggtgtcaatttg 42858620  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8268697 - 8268741
Alignment:
Q  1 aagtctcatgttcgattctctctggtgtcaatttggatgagttaa 45  Q
    ||||| ||||||||||||| ||| |||| ||||||||||||||||    
T  8268697 aagtcacatgttcgattctatctagtgtgaatttggatgagttaa 8268741  T

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