View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10840_low_4 (Length: 324)
Name: NF10840_low_4
Description: NF10840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10840_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 76 - 305
Target Start/End: Original strand, 32362107 - 32362336
Alignment:
| Q |
76 |
atctatgagaatgaaatgttagaggaagttggtgattcattttgttccaattgtcaattgttagggttgcaaattgacttggactaataaaactagccca |
175 |
Q |
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| T |
32362107 |
atctatgagaatgaaatgttacaggaagttggtgattcattttgttccaattgtcaattgttagggttgcaaattgacttggactaataaaactagccca |
32362206 |
T |
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| Q |
176 |
aagtgttattttaaatgaaacagtacaattttaaacattgttgaacaaattattttaacgctattattttagccacaccaaaacttttgtccaatatccg |
275 |
Q |
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| T |
32362207 |
aagtgttattttaaatgaaacagtacaattttaaacattgttgaacaaattattttaacgctgttattttagccacaccaaaacttttgtccaatatccg |
32362306 |
T |
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| Q |
276 |
cccctgcttggaggaggaagacatgaggct |
305 |
Q |
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| T |
32362307 |
cccctgcttggaggaggaagccatgaggct |
32362336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32362029 - 32362082
Alignment:
| Q |
1 |
tgaacatcgagtttcacctgaaggcacgggcagatccaatacatagctacacac |
54 |
Q |
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| T |
32362029 |
tgaacatcgagtttcacctgaaggcacgggcggatccaatacatagctacacac |
32362082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 39721619 - 39721542
Alignment:
| Q |
100 |
gaagttggtgattcattttgttccaattgtcaattgttagggttgcaaattgacttggactaataaaactagcccaaa |
177 |
Q |
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| T |
39721619 |
gaagttggtgactcattttattccaattaacaattgttagggttacaaatgaacttgaactaataaaaatagcccaaa |
39721542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 37575620 - 37575534
Alignment:
| Q |
85 |
aatgaaatgttagaggaagttggtgattcattttgttccaattgtcaattgttagggttgcaaattgacttggactaataaaactag |
171 |
Q |
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| T |
37575620 |
aatgaaatgttagaagaagttggtggcttattttgtttcaattaataattgtcagggttgtagatggacttgaactaataaaactag |
37575534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 39020093 - 39020055
Alignment:
| Q |
220 |
acaaattattttaacgctattattttagccacaccaaaa |
258 |
Q |
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| T |
39020093 |
acaaatttttttaacactattattttagccacaccaaaa |
39020055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 29398398 - 29398487
Alignment:
| Q |
77 |
tctatgagaatgaaatgttagaggaagttggtgattcattttgttccaattgtcaattgttagggttgcaaattgacttggactaataaa |
166 |
Q |
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| T |
29398398 |
tctataagaatgaaatattaaaagatgttgtcgattcattttcttacaattaacatttgttagggtttcgaattgacttgaactaataaa |
29398487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 11476579 - 11476519
Alignment:
| Q |
89 |
aaatgttagaggaagttggtgattcattttgttccaattgtcaattgttagggttgcaaat |
149 |
Q |
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|||||||| |||| ||||| || ||||||||||| |||| |||||||||||||| ||||| |
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| T |
11476579 |
aaatgttaaaggaggttggcgactcattttgttctaattagcaattgttagggttacaaat |
11476519 |
T |
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