View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10840_low_5 (Length: 308)
Name: NF10840_low_5
Description: NF10840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10840_low_5 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 29585534 - 29585238
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29585534 |
ttgtattagttagtattctcctatttataagagagagtggtaattgtactctctttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
29585435 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585434 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
29585335 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctgatacctaacaccggcttccccacagattccctactatttattcataaaataggtaacagtattttcagctct |
295 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585334 |
tgcatgataatattttgttactctgatacctaacacctgcttccccacagattccctactatttattcataaaataggtaacagtattttcagctct |
29585238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 41723219 - 41723455
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagag--aggtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41723219 |
ttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
41723318 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723319 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
41723418 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctgatacctaacacc |
235 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41723419 |
tgcgtgataatattttgttactctggtacctaacacc |
41723455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 34360039 - 34360273
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagag--aggtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34360039 |
ttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
34360138 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360139 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttctacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
34360238 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34360239 |
tgcgtgataatattttgttactctggtacctaaca |
34360273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 41718493 - 41718727
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagag--aggtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41718493 |
ttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
41718592 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718593 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
41718692 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41718693 |
tgcgtgataatattttgttactctggtacctaaca |
41718727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 34352331 - 34352546
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagag--aggtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34352331 |
ttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
34352430 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352431 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
34352530 |
T |
|
| Q |
199 |
tgcgtgataatatttt |
214 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34352531 |
tgcgtgataatatttt |
34352546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 42265986 - 42266220
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagag--aggtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42265986 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagt |
42266085 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266086 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
42266185 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| |
|
|
| T |
42266186 |
tgcgtgataatattttgttactctggtatctaaca |
42266220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 42270705 - 42270939
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagag--aggtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42270705 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagt |
42270804 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270805 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
42270904 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| |
|
|
| T |
42270905 |
tgcgtgataatattttgttactctggtatctaaca |
42270939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 48702055 - 48701821
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48702055 |
ttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
48701956 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701955 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
48701856 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48701855 |
tgcgtgataatattttgttactctggtacctaaca |
48701821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24520259 - 24520035
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24520259 |
ttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
24520160 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520159 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagt |
24520060 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctg |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
24520059 |
tgcgtgataatattttgttactctg |
24520035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 48697366 - 48697131
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48697366 |
ttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
48697267 |
T |
|
| Q |
99 |
tctctactcttgccccgtggtttttt-ccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttag |
197 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48697266 |
tctctactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttag |
48697167 |
T |
|
| Q |
198 |
ctgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48697166 |
ctgcgtgataatattttgttactctggtacctaaca |
48697131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 30945702 - 30945477
Alignment:
| Q |
9 |
gtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagttctctact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945702 |
gtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctact |
30945603 |
T |
|
| Q |
107 |
cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgat |
206 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30945602 |
cttgccccgtgattttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgat |
30945504 |
T |
|
| Q |
207 |
aatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30945503 |
aatattttgttactctgatacctaaca |
30945477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 30950408 - 30950183
Alignment:
| Q |
9 |
gtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagttctctact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950408 |
gtttgtattctcctatttataagagagagtggtaattgtactttccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctact |
30950309 |
T |
|
| Q |
107 |
cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgat |
206 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
30950308 |
cttgccccgtggttttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttatcttattttagctgcgtgat |
30950210 |
T |
|
| Q |
207 |
aatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
30950209 |
aatattttgttactctggtacctaaca |
30950183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 10427376 - 10427599
Alignment:
| Q |
13 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatt-tcttccacttagtgaaagttctctactctt |
109 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||| || |
|
|
| T |
10427376 |
gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttatctactttt |
10427473 |
T |
|
| Q |
110 |
gccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataat |
209 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10427474 |
tccccgtagttttttccccttatttgttgaggggtttccgcgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataat |
10427573 |
T |
|
| Q |
210 |
attttgttactctgatacctaacacc |
235 |
Q |
| |
|
||| |||||||||| ||||||||||| |
|
|
| T |
10427574 |
attctgttactctggtacctaacacc |
10427599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 27 - 220
Target Start/End: Original strand, 48782850 - 48783031
Alignment:
| Q |
27 |
ataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt |
124 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||| ||| | |||||||||||||||||||||||||||| ||| || ||||| |
|
|
| T |
48782850 |
ataagagagagtggtaattgtactc--catgtatttagagagaggtcatctaatttcttccacttagtgaaagttctc---------cccatg--ttttt |
48782936 |
T |
|
| Q |
125 |
ccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttact |
220 |
Q |
| |
|
||| |||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
48782937 |
ccctttatttgttgagaaatttccacgtaaa-tattgtgtgttcagttcctgttttctcgtttcttattttaatcgcgtgataatattttgatact |
48783031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 1979279 - 1979375
Alignment:
| Q |
13 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagaggtcctgtaatttcttccacttagtgaaagttctctactctt |
109 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | ||| ||||||| ||||||||||||| ||||||||||||| |||| |||||||| ||||||||| |
|
|
| T |
1979279 |
gtattctcctgtttataagagagagtggtaaatataccctccttgcatttagagaggtcgtgtaatttcttcctcttactgaaagttatctactctt |
1979375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 17248015 - 17248112
Alignment:
| Q |
82 |
ttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
180 |
Q |
| |
|
||||||||| |||||||||| ||||||| || |||||||||||||||||||| || |||| |||||| || ||||||||||| || |||| ||||||| |
|
|
| T |
17248015 |
ttccacttaatgaaagttctatactcttatccggtggttttttccccttatttattaagggatttccatgt-aaatattgtgtatttagtttctctttt |
17248112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 30165900 - 30165968
Alignment:
| Q |
154 |
aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct |
222 |
Q |
| |
|
||||||| |||||||| ||| | ||||||| | ||||||||||| || |||||| |||||||||||||| |
|
|
| T |
30165900 |
aaatattatgtgttcaattcattttttctcatatcttattttagttgtgtgatattattttgttactct |
30165968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 1979567 - 1979604
Alignment:
| Q |
129 |
ttatttgttgaggggtttccacgtaaaatattgtgtgtt |
167 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1979567 |
ttatttgttgaggggtttccacgt-aaatattgtgtgtt |
1979604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 36615438 - 36615361
Alignment:
| Q |
154 |
aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgatacctaa |
231 |
Q |
| |
|
||||| ||| ||||| ||| |||||||||| | |||||||||| ||| | ||||||||||| ||||||| ||||||| |
|
|
| T |
36615438 |
aaataatgtatgttcggtttctcttttctcatatcttattttaactgtgcgataatattttattactctagtacctaa |
36615361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 27878935 - 27878709
Alignment:
| Q |
9 |
gtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagttctctact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878935 |
gtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctact |
27878836 |
T |
|
| Q |
107 |
cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878835 |
cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgat |
27878736 |
T |
|
| Q |
207 |
aatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
27878735 |
aatattttgttactctggtacctaaca |
27878709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 1234784 - 1235018
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagag--aggtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1234784 |
ttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
1234883 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234884 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
1234983 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1234984 |
tgcgtgataatattttgttactctggtacctaaca |
1235018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 26976365 - 26976131
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26976365 |
ttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
26976266 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976265 |
tctctactcttgccccttggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
26976166 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26976165 |
tgcgtgataatattttgttactctggtacctaaca |
26976131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 27874224 - 27873990
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27874224 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagt |
27874125 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27874124 |
tctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttaga |
27874025 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27874024 |
tgcgtgataatattttgttactctggtacctaaca |
27873990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 30986603 - 30986829
Alignment:
| Q |
13 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagttctctactcttg |
110 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30986603 |
gtattcttctatttacaagagagagtggtaattgtactctccttgcatttagagagaggtcctgcaatttcttccacttagtgaaagttctctactcttg |
30986702 |
T |
|
| Q |
111 |
ccccgtggttttttcc--ccttatttgttgaggggt---ttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtga |
205 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30986703 |
ccccgtggttttttttttccttatttgttgaggggtactttccacgtaaa-tattgtgcgttcagttcctcttttctcgtctcttattttagctacgtga |
30986801 |
T |
|
| Q |
206 |
taatattttgttactctgatacctaaca |
233 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
30986802 |
taatattttgttactctgatacctaaca |
30986829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 18968007 - 18968195
Alignment:
| Q |
49 |
ctctccttgtatttagagag--gtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt |
145 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18968007 |
ctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttttctactcttgccccgtggttttttccccttatttgttgaggggtt |
18968106 |
T |
|
| Q |
146 |
tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgatacctaacac |
234 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18968107 |
tccacgtaaaatattatgtattcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacac |
18968195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 30966747 - 30966923
Alignment:
| Q |
13 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagttctctactcttg |
110 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| || ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30966747 |
gtattcttctatttacaagagagagtggtaattgtactctccttgcatttagagagaggttctgcaatttcttccacttagtgaaagttctctactcttg |
30966846 |
T |
|
| Q |
111 |
ccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct |
187 |
Q |
| |
|
||||||| |||| || |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30966847 |
ccccgtgattttatttcccttatttgttgatgggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtct |
30966923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 23012683 - 23012520
Alignment:
| Q |
49 |
ctctccttgtatttagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
148 |
Q |
| |
|
||||| ||||||||| ||||||| || ||||||| |||||||||||||||||||||||||| ||| ||| |||||||||||| || ||| | |||||| |
|
|
| T |
23012683 |
ctctcattgtatttaaagaggtcttgaaatttctctcacttagtgaaagttctctactcttg-cccatgg-tttttccccttaatttgtgacgagtttcc |
23012586 |
T |
|
| Q |
149 |
acgtaaaatattgtgtgttcagttcctc-ttttctcgtctcttattttagctgcgtgataatatttt |
214 |
Q |
| |
|
|||| ||||| |||||||||| ||| || ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23012585 |
acgt-aaataatgtgtgttcaattcttctttttctcgtctcttattttagttgcgtgataatatttt |
23012520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 21966698 - 21966852
Alignment:
| Q |
63 |
agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt |
162 |
Q |
| |
|
||||||||| | |||||||||||| ||||||||||||||||||||||||||| | | |||||||| |||||| ||||||||||||||| | ||||||| | |
|
|
| T |
21966698 |
agagaggtcttataatttcttccatttagtgaaagttctctactcttgccccat-gatttttccctttatttattgaggggtttccacat-aaatatttt |
21966795 |
T |
|
| Q |
163 |
gtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttact |
220 |
Q |
| |
|
|||| ||||||||||||||| | | ||| ||||||||||||||||| ||| |||||| |
|
|
| T |
21966796 |
atgtttagttcctcttttctcatatgtta-tttagctgcgtgataatgtttcgttact |
21966852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 30967674 - 30967725
Alignment:
| Q |
182 |
tcgtctcttattttagctgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
30967674 |
tcgtctcttattttagctgcttgataatattttgttactctggtacctaaca |
30967725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 6174235 - 6174185
Alignment:
| Q |
49 |
ctctccttgtatttagagaggtcctgtaatttcttccacttagtgaaagtt |
99 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
6174235 |
ctctacttgtatttagagaggtcttgtaatttctcccacttaatgaaagtt |
6174185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 5823509 - 5823275
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5823509 |
ttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
5823410 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823409 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
5823310 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5823309 |
tgcgtgataatattttgttactctggtacctaaca |
5823275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 5818747 - 5818513
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5818747 |
ttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
5818648 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818647 |
tctctactcttgccccgtggttttttccccttattagttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagt |
5818548 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5818547 |
tgcgtgataatattttgttactctggtacctaaca |
5818513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 54545975 - 54546200
Alignment:
| Q |
9 |
gtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagag--aggtcctgtaatttcttccacttagtgaaagttctctact |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54545975 |
gtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcatccacttagtgaaagttctctact |
54546074 |
T |
|
| Q |
107 |
cttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgat |
206 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54546075 |
ctagccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtatgttcagttcctcttttctcatctcttattttagctgcgtgat |
54546173 |
T |
|
| Q |
207 |
aatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
54546174 |
aatattttgttactctggtacctaaca |
54546200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 2817498 - 2817263
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagag--tggtaattgtactctccttgtatttagagagg--tcctgtaatttcttccacttagtgaaa |
96 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||| | |
|
|
| T |
2817498 |
ttgtattagttagtattctcctatttataagagagagagtggtgattgtactctccttgtatttagagagagttcttgtaatttcttccacttagtgaga |
2817399 |
T |
|
| Q |
97 |
gttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttta |
196 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2817398 |
gttctttactcttgccctgtggttttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttatttta |
2817300 |
T |
|
| Q |
197 |
gctgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2817299 |
gctgcgtgataatattttgttactctggtacctaaca |
2817263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 24659287 - 24659136
Alignment:
| Q |
80 |
tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttt |
179 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24659287 |
tcttccacttagtgaaagttct--actcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatgttgtgtgttcagttcctcttt |
24659190 |
T |
|
| Q |
180 |
tctcgtctcttattttagctgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
24659189 |
tctcatctcttattttagctgtgtgataatattttattactctggtacctaaca |
24659136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 4579254 - 4579358
Alignment:
| Q |
119 |
ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4579254 |
ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgtta |
4579353 |
T |
|
| Q |
219 |
ctctg |
223 |
Q |
| |
|
||||| |
|
|
| T |
4579354 |
ctctg |
4579358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 31204950 - 31204781
Alignment:
| Q |
49 |
ctctccttgtatttagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc-ccgtggttttttccccttatttgttgaggggtttc |
147 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| | ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
31204950 |
ctctccttatatttagagaggttttgtaatttttcccacttagtgaaagttctctactattgcctccgtgattttttcctcttatttgttgaggggtttc |
31204851 |
T |
|
| Q |
148 |
cacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttac |
219 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| || |||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
31204850 |
cacgt-aaatattgtgagttcagttcctctttt-tcatctcttcttttaactgcgtgctaatattttgttac |
31204781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 195
Target Start/End: Original strand, 35977103 - 35977258
Alignment:
| Q |
40 |
gtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagttc-tctactcttgccccgtggttttttccccttatttgt |
136 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| |||||||| ||||||||||||||| || | |||||||||| ||| |||||||| ||| ||| |
|
|
| T |
35977103 |
gtaattgttctctccttgtatttagagagaagtcttgtaattttttccacttagtgaaaactcttttactcttgccaagtgagtttttccc--tatatgt |
35977200 |
T |
|
| Q |
137 |
tgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttt |
195 |
Q |
| |
|
||| || ||| |||| ||||||||| |||||| || |||||||||| |||||||||| |
|
|
| T |
35977201 |
tgatggttttttacgt-aaatattgtttgttcaatttctcttttctcacctcttatttt |
35977258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 219
Target Start/End: Original strand, 36420054 - 36420220
Alignment:
| Q |
49 |
ctctccttgtatttagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
148 |
Q |
| |
|
||||| ||||||||||||| || |||||||||| | |||||| || ||| |||||| ||||||||| || |||| | | ||||||||| | ||||| |
|
|
| T |
36420054 |
ctctcattgtatttagaga--tcttgtaatttctccaacttagcaaatgttttctacttttgccccgtagtctttttctgt-atttgttgaaagatttcc |
36420150 |
T |
|
| Q |
149 |
acgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttac |
219 |
Q |
| |
|
||||||| |||| ||||| |||| | ||||||| |||| ||||||| || | ||||||||||||||||| |
|
|
| T |
36420151 |
acgtaaa-tattatgtgtgttgttctttttttctcatctcatattttaactacatgataatattttgttac |
36420220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 9439606 - 9439372
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9439606 |
ttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
9439507 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439506 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
9439407 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9439406 |
tgcgtgataatattttgttactctggtacctaaca |
9439372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 9444326 - 9444092
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9444326 |
ttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
9444227 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444226 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
9444127 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9444126 |
tgcgtgataatattttgttactctggtacctaaca |
9444092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 4799315 - 4799371
Alignment:
| Q |
160 |
tgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgt |
216 |
Q |
| |
|
|||||||||| || |||||||||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
4799315 |
tgtgtgttcaatttctcttttctcatctcttattttagcagtgtgataatattttgt |
4799371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5198889 - 5198665
Alignment:
| Q |
1 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagt |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5198889 |
ttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
5198790 |
T |
|
| Q |
99 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198789 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
5198690 |
T |
|
| Q |
199 |
tgcgtgataatattttgttactctg |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5198689 |
tgcgtgataatattttgttactctg |
5198665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 15602962 - 15603183
Alignment:
| Q |
3 |
gtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagttc |
100 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||| |||||||||||| |||| || |||||||||| ||| |||||||||||| ||||||||||||||| |
|
|
| T |
15602962 |
gtgttagttagtattctcctatttacaagatagaatggtaattgtacactccatgcatttagagagaggtcttgtaatttcttctacttagtgaaagttc |
15603061 |
T |
|
| Q |
101 |
tctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
15603062 |
tctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttcaattg |
15603161 |
T |
|
| Q |
201 |
cgtgataatattttgttactct |
222 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
15603162 |
cgtgataatattttcttactct |
15603183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 825632 - 825796
Alignment:
| Q |
70 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
825632 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgagtggtttccacgtaaaatattgtgtgttc |
825731 |
T |
|
| Q |
169 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
825732 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
825796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 830288 - 830452
Alignment:
| Q |
70 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
830288 |
tcctgtaatttcttccacttagtgaaagttctccactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc |
830387 |
T |
|
| Q |
169 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
830388 |
agttcctcttttctcgtctcttattttaactgcgtgataatattttgttactctggtacctaaca |
830452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 28715857 - 28716067
Alignment:
| Q |
13 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagttctctactcttg |
110 |
Q |
| |
|
||||||||||||||||| || | ||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
28715857 |
gtattctcctatttataggaaacggtggtaattgtactctccttgcatttagagagatgtcctgtaatttcttccactttgtgaaagttctctattcttc |
28715956 |
T |
|
| Q |
111 |
ccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataata |
210 |
Q |
| |
|
| ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
28715957 |
tcttgtggttttt-ccccttatttaatgaggggtttccacgtaaa-tattgtgtgttcaattcctcttttgtcgtctcttattttaaatgtgtgataata |
28716054 |
T |
|
| Q |
211 |
ttttgttactctg |
223 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28716055 |
ttttgttactctg |
28716067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 49 - 223
Target Start/End: Complemental strand, 30397096 - 30396921
Alignment:
| Q |
49 |
ctctccttgtatttaga--gaggtcctgtaatttcttccacttagtgaaa-gttctctactcttgccccgtggttttttccccttatttgttgaggggtt |
145 |
Q |
| |
|
|||||||||||| |||| |||||| |||||||||||||||||||||||| |||||||||||| |||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
30397096 |
ctctccttgtatatagaaagaggtcttgtaatttcttccacttagtgaaaagttctctactctcgccctgtgatttttttcccttatttgttgaggggtt |
30396997 |
T |
|
| Q |
146 |
tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctg |
223 |
Q |
| |
|
|| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30396996 |
tcaacg-aaaatat-gtgtgttcagttcgtcttttctcgtctcttattttagctgcgtgataatattttgctactctg |
30396921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 31593121 - 31592910
Alignment:
| Q |
16 |
ttctcctatttataagagagagtggtaattgtactctccttgtatttagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccg |
115 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||||| ||| ||| || ||| || ||||||||||| | |||||||||||||||||||||| | | |
|
|
| T |
31593121 |
ttctcctatttacaagagac--tggtaattatactcttcttatatatataga--tcttgtaatttctttcggttagtgaaagttctctactcttatct-g |
31593027 |
T |
|
| Q |
116 |
tggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttg |
215 |
Q |
| |
|
||||||||| | |||||| ||||| | |||||||||||| |||||| |||| |||||||||||||||||||||||| || ||| ||||||||||| || |
|
|
| T |
31593026 |
tggttttttttc-ttatttattgagagatttccacgtaaattattgtatgttatgttcctcttttctcgtctcttattctatctgtgtgataatattatg |
31592928 |
T |
|
| Q |
216 |
ttactctgatacctaaca |
233 |
Q |
| |
|
||||| ||||||| |||| |
|
|
| T |
31592927 |
ttactttgatacccaaca |
31592910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 13844014 - 13843865
Alignment:
| Q |
15 |
attctcctatttataagagagagtggtaattgtactctccttgtatttagagagg--tcctgtaatttcttccacttagtgaaagttctctactcttgcc |
112 |
Q |
| |
|
|||||||||||| ||| | |||||||||||| || ||| |||||||||| | ||| ||||||||||||||||||||| ||||| |||| |||| || | |
|
|
| T |
13844014 |
attctcctatttttaaaatagagtggtaattttattcttcttgtatttataaaggggtcctgtaatttcttccacttaatgaaaattctatacttttaac |
13843915 |
T |
|
| Q |
113 |
ccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgt |
164 |
Q |
| |
|
| | |||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13843914 |
ctat-aatttttctccttatttgttgaggggtttccacgt-aaatattgtgt |
13843865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 8004167 - 8004292
Alignment:
| Q |
13 |
gtattctcctatttataagagagagtggtaattgtactctccttgtattt--agagaggtcctgtaatttcttccacttagtgaaagttctctactcttg |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| | |||||||||||| | |||||||||| |||| || | |
|
|
| T |
8004167 |
gtattctcctatttataagagagagt-gtaattgtactcttcttacatttaaagagaggttttataatttcttccattcagtgaaagttttctagtcata |
8004265 |
T |
|
| Q |
111 |
ccccgtggttttttccccttatttgttg |
138 |
Q |
| |
|
|||||| | ||||||| ||||||||||| |
|
|
| T |
8004266 |
ccccgttg-tttttcctcttatttgttg |
8004292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 13840456 - 13840240
Alignment:
| Q |
13 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttag--agaggtcctgtaatttcttccacttagtgaaagttctctactcttg |
110 |
Q |
| |
|
||||||| ||||| ||||||||| | ||||||||||||||||| ||||||| |||||| |||||||| || |||| || ||| || |||||||||| |
|
|
| T |
13840456 |
gtattcttttatttttaagagagaattgtaattgtactctccttatatttagagagaggttttgtaattt-ttttacttggtaaaaattttctactcttg |
13840358 |
T |
|
| Q |
111 |
ccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataata |
210 |
Q |
| |
|
| || || |||| |||||| |||||||||| || || || |||||| ||||||| ||||||| |||||| ||| ||||| || | |||||||||| |
|
|
| T |
13840357 |
ctccatg--ttttcccccttgtttgttgaggaattctcatgt-aaatat--tgtgttcggttcctcctttctcatcttttattataattacgtgataata |
13840263 |
T |
|
| Q |
211 |
ttttgttactctgatacctaaca |
233 |
Q |
| |
|
|||||||| |||| |||| |||| |
|
|
| T |
13840262 |
ttttgttattctggtacccaaca |
13840240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 12175881 - 12175768
Alignment:
| Q |
98 |
ttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttag |
197 |
Q |
| |
|
||||||||||||| || | ||||||||| |||||| ||||| |||||||| ||||||||||||||||| || || |||| || ||| ||||||||| |
|
|
| T |
12175881 |
ttctctactcttgtccaattgttttttcca-ttatttattgagatgtttccaca-aaaatattgtgtgttcaatttcttttttatcatcttttattttag |
12175784 |
T |
|
| Q |
198 |
ctgcgtgataatattt |
213 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12175783 |
ttgcgtgataatattt |
12175768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 172
Target Start/End: Original strand, 42117764 - 42117876
Alignment:
| Q |
58 |
tatttagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaat |
157 |
Q |
| |
|
|||||||||||||| | |||||||| | ||| |||||||| |||||| ||| | ||||| |||||||||||||| ||||| |||||| |||| |||| |
|
|
| T |
42117764 |
tatttagagaggtcttataatttctctcgtttaatgaaagttatctacttttgtctcgtgg-tttttccccttattaattgagaggtttctacgt-aaat |
42117861 |
T |
|
| Q |
158 |
attgtgtgttcagtt |
172 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
42117862 |
attgtatgttcagtt |
42117876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 9358207 - 9358158
Alignment:
| Q |
169 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgtta |
218 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||| ||||||||| |||| |
|
|
| T |
9358207 |
agttcttcttttctcgtctgttgttttagctgcgtaataatatttggtta |
9358158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 16183852 - 16183636
Alignment:
| Q |
13 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatt-tcttccacttagtgaaagttctctactctt |
109 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16183852 |
gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtatttagagagaggtcttgtaattgtcttccacttagtgaaagttctctactctt |
16183755 |
T |
|
| Q |
110 |
gccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16183754 |
gccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataat |
16183655 |
T |
|
| Q |
210 |
attttgttactctgatacc |
228 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
16183654 |
attttgttactctggtacc |
16183636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 30235112 - 30235339
Alignment:
| Q |
9 |
gtttgtattctcctatttataagagagagtggtaattgtactctccttgtattt---agagaggtcctgtaatttcttccacttagtgaaagttctctac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||| | ||| |||||||| ||||| |
|
|
| T |
30235112 |
gtttgtattctcctatttataagagagagtggtaattgtactctccttataaataggagagaggtcctgtaatttcttctagttattgaaagttttctac |
30235211 |
T |
|
| Q |
106 |
tcttgccccgtgg-ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtg |
204 |
Q |
| |
|
|||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||| || |
|
|
| T |
30235212 |
tcttatcccgtggtttttttccccttattcgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcattttttattttagctgtgta |
30235310 |
T |
|
| Q |
205 |
ataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||| ||||||| |||| |||| |
|
|
| T |
30235311 |
ataatattttgctactctggtacccaaca |
30235339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 8140183 - 8139964
Alignment:
| Q |
13 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatttcttccacttagtgaaagttctctactcttg |
110 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||||||||| |||||| ||| | |||||||||||||| |||||||||| |||| |||| |
|
|
| T |
8140183 |
gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtattaagagagaggtcttataatttcttccactgagtgaaagttttctaatctta |
8140086 |
T |
|
| Q |
111 |
ccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataata |
210 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||| | |||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
8140085 |
ccccatggttttctccccttatttgttgaggggtttccacat-aaatattgtgcgttcagtttctcttttctcatctcttattttagctgtgtgataata |
8139987 |
T |
|
| Q |
211 |
ttttgttactctgatacctaaca |
233 |
Q |
| |
|
||||||||||||| |||| |||| |
|
|
| T |
8139986 |
ttttgttactctggtacccaaca |
8139964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 49 - 233
Target Start/End: Complemental strand, 8138645 - 8138460
Alignment:
| Q |
49 |
ctctccttgtatttagag--aggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt |
146 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||| |||||| |||||||| |
|
|
| T |
8138645 |
ctctccttgtatttagagggaggtcttgtaatttcttccatttagtgaaagttctctaatcttgcctcgtggttttctccccttgtttgttaaggggttt |
8138546 |
T |
|
| Q |
147 |
ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgatacctaaca |
233 |
Q |
| |
|
|||| | || || |||||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |||| |
|
|
| T |
8138545 |
ccacat-aattactgtgtgttaagtttttcttttctcgtctcttattttagctgcgtgataatactttgatactctgctacccaaca |
8138460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 36528529 - 36528415
Alignment:
| Q |
118 |
gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt |
217 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||| ||||| || || |||||| |
|
|
| T |
36528529 |
gttttttttccttattcgtggaggggtttccacgtaaa-tattgtgtgttcaattcctctattctcatctcttattttagttgcgtaattttactttgtt |
36528431 |
T |
|
| Q |
218 |
actctgatacctaaca |
233 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
36528430 |
actctgatacccaaca |
36528415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 220
Target Start/End: Complemental strand, 5102749 - 5102606
Alignment:
| Q |
75 |
taatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcc |
174 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||||| || ||| |||||||||||||||||||| |||||| || || ||||||| ||| || ||| || |
|
|
| T |
5102749 |
taatttctcccacttagtaaaagttatctactcttgctccatgg-tttttccccttatttgttga-gggttttcatgt-aaatattatgtatttagtccc |
5102653 |
T |
|
| Q |
175 |
tc-ttttctcgtctcttattttagctgcgtgataatattttgttact |
220 |
Q |
| |
|
|| ||||||| ||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
5102652 |
tctttttctcatcttttattttagttgagtgataatattttgttact |
5102606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 31233821 - 31233730
Alignment:
| Q |
14 |
tattctcctatttataagagagagtggtaattgtactctccttgtatttagagaggtcctgtaatttcttccacttagtgaaagttctctact |
106 |
Q |
| |
|
|||||| |||||| ||||| |||||| |||||||||||| ||| ||||||||||| | ||||||||||| |||| |||||| ||||||||| |
|
|
| T |
31233821 |
tattcttctatttttaagaaagagtgacaattgtactctctttg-atttagagaggccatgtaatttctttaacttggtgaaaattctctact |
31233730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 49 - 234
Target Start/End: Complemental strand, 27413 - 27225
Alignment:
| Q |
49 |
ctctccttgtatttagagag--gtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt |
145 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27413 |
ctctccttgtatttagagagaagtattgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt |
27314 |
T |
|
| Q |
146 |
tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgatacctaacac |
234 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27313 |
tccacgtaaagtattgtgtgttcagtttctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacac |
27225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 46191327 - 46191547
Alignment:
| Q |
13 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag--gtcctgtaatt-tcttccacttagtgaaagttctctactctt |
109 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| |||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46191327 |
gtattctcctatttc-aagagagag-ggtaatttgtctctccttctatttagagagaagtcttgtaattgtcttccacttagtgaaagttctctactctt |
46191424 |
T |
|
| Q |
110 |
gccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataat |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46191425 |
gtcccgtggttttttccccttatttgttgaggggtttccacgtaaaatat--tgtgttcagttcctcttttctcgtctcttattttagctgcatgataat |
46191522 |
T |
|
| Q |
210 |
attttgttactctgatacctaacac |
234 |
Q |
| |
|
|||||||||||||| | |||||||| |
|
|
| T |
46191523 |
attttgttactctggttcctaacac |
46191547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 49 - 222
Target Start/End: Complemental strand, 30697300 - 30697126
Alignment:
| Q |
49 |
ctctccttgtatttaga--gaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt |
146 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
30697300 |
ctctccttgtatttagaaagaggtcttgtaatttcttccacttagtgaaagttctctactcttgccacgtggctttttccccttatttgttgaggggttt |
30697201 |
T |
|
| Q |
147 |
ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct |
222 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30697200 |
ccacgt-aaatattttgtgttaagttcctcttttctcgtctcttatgttagctgcgtgataatattttgttactct |
30697126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 4130215 - 4130389
Alignment:
| Q |
49 |
ctctccttgtatttagagag--gtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt |
145 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
4130215 |
ctctccttgtatttagagagaagtcttgtaattatcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgagggatt |
4130314 |
T |
|
| Q |
146 |
tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactc |
221 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
4130315 |
tccacgt-aaattttgtgtgttcagttcctcttttctcgtcacttattttagttgcgtgataatattttgttactc |
4130389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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