View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10840_low_6 (Length: 274)
Name: NF10840_low_6
Description: NF10840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10840_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 67 - 266
Target Start/End: Complemental strand, 30054856 - 30054658
Alignment:
| Q |
67 |
ttacaactttactactactggtattaataagacaaacaaaagctcccttttgcattatgacattaattttgtgaccgcaaaaaataaataaagacaatga |
166 |
Q |
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| T |
30054856 |
ttactactttactactactggtattaataagacaaacaaaagctcccttttgcattatgacattaattttgtgaccgaaaaaaataaataaagacaatga |
30054757 |
T |
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| Q |
167 |
aaagcttaattagaattgagtggaccccccatgaaactctttcctttggaatttctcatattgcaaaagctcattccatgttttcttctaatttcttctc |
266 |
Q |
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| T |
30054756 |
aaagcttaattagaattgagtggaccccacatgaaactctttcctttgg-atttctcatattgcaaaaactcattccatgtttccttctaatttcttctc |
30054658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 30054929 - 30054888
Alignment:
| Q |
50 |
ctattttcctttccttgttacaactttactactactggtatt |
91 |
Q |
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| T |
30054929 |
ctattttcctttccttgttacaactttactactactagtatt |
30054888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 30054985 - 30054944
Alignment:
| Q |
6 |
attatacacatctagaatcggtttagaagtgaaaccaaacat |
47 |
Q |
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| T |
30054985 |
attatacacatctagaatgggtttagaagtaaaaccaaacat |
30054944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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