View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10840_low_8 (Length: 248)
Name: NF10840_low_8
Description: NF10840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10840_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39487347 - 39487113
Alignment:
| Q |
1 |
tctttagcaaatgataatttctctccttcccttcaacggtcataagcttataatttcctaaaattcataacacttctgaccatcaatgtcatcgaacgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39487347 |
tctttagcaaatgataatttctctccttcccttcaacagtcataagcttataatttcctaaaattcataacacttctgaccatcaatgtcatcgaacgtt |
39487248 |
T |
|
| Q |
101 |
tgacgtttaccgaaacctgtcattcgtaacgtcctaccaacggtcattttgacaatcatttcactaattgtataacaaggtccttacaccacaattcgtg |
200 |
Q |
| |
|
| ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39487247 |
taacgtttatcgaaaccagtcattcgtaacgtcctaccaacagtcattttgacaatcatttcactaattgtataacaaggtccttacaccacaattcgt- |
39487149 |
T |
|
| Q |
201 |
gtacatacaatctataatttaacctctcactcaccctttg |
240 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39487148 |
----atacaatttataatttaacctctcactcaccctttg |
39487113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University