View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10840_low_9 (Length: 247)

Name: NF10840_low_9
Description: NF10840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10840_low_9
NF10840_low_9
[»] chr1 (2 HSPs)
chr1 (4-229)||(5131044-5131270)
chr1 (152-208)||(26324131-26324187)
[»] chr5 (13 HSPs)
chr5 (98-209)||(8641752-8641863)
chr5 (81-214)||(8529292-8529425)
chr5 (79-209)||(9003816-9003944)
chr5 (97-214)||(8535872-8535989)
chr5 (72-200)||(1599932-1600060)
chr5 (76-218)||(2856501-2856643)
chr5 (76-218)||(2844674-2844816)
chr5 (76-218)||(2874111-2874253)
chr5 (72-202)||(9074356-9074486)
chr5 (128-218)||(8637275-8637365)
chr5 (128-195)||(8644620-8644687)
chr5 (128-210)||(8678222-8678305)
chr5 (131-193)||(2904642-2904704)
[»] chr7 (2 HSPs)
chr7 (81-214)||(48361470-48361603)
chr7 (97-215)||(35780184-35780302)
[»] chr4 (1 HSPs)
chr4 (81-214)||(9443453-9443586)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 5131044 - 5131270
Alignment:
Q  4 ggaggagcagagaatgattgcaatctctcactttcaaaagt-aaacacaacaatgacctttttccaagatcatatatgatccaatgaagtgtgtcattca 102  Q
    ||||||| || |||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5131044 ggaggagaagggaatgattgcaatctctcactttcaaaactgaaacacaacaatgacctttttctaagatcatatatgatccaatgaagtgtgtcattca 5131143  T
Q  103 cacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5131144 cacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacg 5131243  T
Q  203 ctcaaactcccaacgaacggcacgttt 229  Q
    |||||||||||||||||||||||||||    
T  5131244 ctcaaactcccaacgaacggcacgttt 5131270  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 26324187 - 26324131
Alignment:
Q  152 aacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacgctcaaa 208  Q
    |||||||||||| |||  ||||||||| ||||  ||| |||||||||||||||||||    
T  26324187 aacatttctccaggacggtgttccaagtgtgttcatcccaaggatcacacgctcaaa 26324131  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 8641752 - 8641863
Alignment:
Q  98 attcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatc 197  Q
    |||||||||||| ||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||||   || |||||| |||| |||||||||||||    
T  8641752 attcacacaagtgggatacttaagactcgaaatagaaatctgaggatccacttcaacatttctccatgatggtgctccaagtgtgtttatctcaaggatc 8641851  T
Q  198 acacgctcaaac 209  Q
    ||||||||||||    
T  8641852 acacgctcaaac 8641863  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 8529292 - 8529425
Alignment:
Q  81 atccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagag 180  Q
    |||||||||||||   ||||||||||||| ||| |||  || ||||||| |||||| ||| |||||||||||||||||||||| ||   ||||||||| |    
T  8529292 atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg 8529391  T
Q  181 tgtgtatctcaaggatcacacgctcaaactccca 214  Q
    ||| ||||||||||||||||||||||||| ||||    
T  8529392 tgtttatctcaaggatcacacgctcaaacaccca 8529425  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 9003816 - 9003944
Alignment:
Q  79 tgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaag 178  Q
    ||||||||||||||| | ||||||||||||| ||| | | ||| ||| ||||||| |  ||| |||||||||||||||||||||||||   ||||||       
T  9003816 tgatccaatgaagtgcgccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcc--c 9003913  T
Q  179 agtgtgtatctcaaggatcacacgctcaaac 209  Q
    ||||||||||||||||||| |||||||||||    
T  9003914 agtgtgtatctcaaggatcgcacgctcaaac 9003944  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 8535872 - 8535989
Alignment:
Q  97 cattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggat 196  Q
    ||||||||||||| ||| |||  || ||||||| |||||| ||| |||||||||||||||||||||| ||    |||||||| |||| |||||||||| |    
T  8535872 cattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatggggttccaagtgtgtttatctcaagggt 8535971  T
Q  197 cacacgctcaaactccca 214  Q
    || |||||||||||||||    
T  8535972 caaacgctcaaactccca 8535989  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 1600060 - 1599932
Alignment:
Q  72 tcatatatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatg 171  Q
    |||||| | |||||||||||||   ||||||||||||| |||  || |||| || ||| |||||| ||| |||||||||||||||||||||| ||   ||    
T  1600060 tcatatcttatccaatgaagtgcaccattcacacaagtgggattcttaagcatccaaaaagaaatttgaggatccacttcaacatttctccaggatggtg 1599961  T
Q  172 ttccaagagtgtgtatctcaaggatcaca 200  Q
    ||||||| |||| ||||||||||||||||    
T  1599960 ttccaagtgtgtttatctcaaggatcaca 1599932  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 218
Target Start/End: Complemental strand, 2856643 - 2856501
Alignment:
Q  76 atatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttcc 175  Q
    |||| ||||||||||||| | |||||||||| || |||  |  |||| || ||| |||||| ||| |||||||||||||||||||||||||  |||||||    
T  2856643 atataatccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatgatgttcc 2856544  T
Q  176 aagagtgtgtatctcaaggatcacacgctcaaactcccaacga 218  Q
     || ||||||||||| || |  |||||||||||| || |||||    
T  2856543 gagcgtgtgtatctcgagcactacacgctcaaacaccaaacga 2856501  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 218
Target Start/End: Complemental strand, 2844816 - 2844674
Alignment:
Q  76 atatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttcc 175  Q
    |||| ||||||||||||| | |||||||||| || |||  |  |||| || ||| |||||| ||| ||||||||||||| |||||||||||   ||||||    
T  2844816 atataatccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacctttctccatgatggtgttcc 2844717  T
Q  176 aagagtgtgtatctcaaggatcacacgctcaaactcccaacga 218  Q
    ||| ||||||||||| || |  |||||||||||| || |||||    
T  2844716 aagcgtgtgtatctcgagcactacacgctcaaacaccaaacga 2844674  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 218
Target Start/End: Complemental strand, 2874253 - 2874111
Alignment:
Q  76 atatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttcc 175  Q
    |||| ||||||||||||| | |||||||||| || |||  |  |||| || ||| |||||| ||| |||||||||||||||||||||||||   ||||||    
T  2874253 atataatccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatggtgttcc 2874154  T
Q  176 aagagtgtgtatctcaaggatcacacgctcaaactcccaacga 218  Q
     || ||||||||||| || |  |||||||||||| || |||||    
T  2874153 gagcgtgtgtatctcgagcactacacgctcaaacaccaaacga 2874111  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 9074486 - 9074356
Alignment:
Q  72 tcatatatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatg 171  Q
    |||||| | |||||||||||||   ||||||||||||| ||| |||| || ||| ||| |||||| ||| |||||||||||||||||||| ||     ||    
T  9074486 tcatatcttatccaatgaagtgcaccattcacacaagtgggatactcgagactcaaaaaagaaatttgaggatccacttcaacatttctcaatattgttg 9074387  T
Q  172 ttccaagagtgtgtatctcaaggatcacacg 202  Q
    ||||||| |||| ||||| ||||||||||||    
T  9074386 ttccaagtgtgtttatctgaaggatcacacg 9074356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 8637275 - 8637365
Alignment:
Q  128 aatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacgctcaaactcccaacga 218  Q
    ||||||||| ||  ||||||||||| |||||||||||||   ||||||||| || | ||||||||||| || ||| |||||| ||||||||    
T  8637275 aatagaaatttggggatccacttcagcatttctccatgatggtgttccaagtgtatatatctcaaggaccatacgatcaaacacccaacga 8637365  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 8644620 - 8644687
Alignment:
Q  128 aatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaagga 195  Q
    ||||||||| ||| |||| |||||| |||||||||||||   ||||||||| |||| |||||||||||    
T  8644620 aatagaaatttgaggatctacttcagcatttctccatgatggtgttccaagtgtgtttatctcaagga 8644687  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 8678222 - 8678305
Alignment:
Q  128 aatagaaatctgaagatccacttcaacatttctccatgacaatg-ttccaagagtgtgtatctcaaggatcacacgctcaaact 210  Q
    ||||||||| ||| ||||||||||| |||||||||||||   || ||||||  |||| |||||||||||||| ||| |||||||    
T  8678222 aatagaaatttgaggatccacttcagcatttctccatgatggtgtttccaattgtgtttatctcaaggatcatacgatcaaact 8678305  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 2904704 - 2904642
Alignment:
Q  131 agaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaag 193  Q
    |||||| ||| |||||||||||| ||||||||||||   |||||| || ||||||||||||||    
T  2904704 agaaatttgaggatccacttcaagatttctccatgatgttgttccgagcgtgtgtatctcaag 2904642  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 48361603 - 48361470
Alignment:
Q  81 atccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagag 180  Q
    |||||||||||||   ||||||||||||| ||| |||| || ||||||| |||||| ||| |||||||||||||||| ||||| ||   ||||||||| |    
T  48361603 atccaatgaagtgcaccattcacacaagtgggatactcgagactcgaaaaagaaatgtgaggatccacttcaacattcctccaggatggtgttccaagtg 48361504  T
Q  181 tgtgtatctcaaggatcacacgctcaaactccca 214  Q
    ||| ||||||||||||||||||||||||||||||    
T  48361503 tgtttatctcaaggatcacacgctcaaactccca 48361470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 35780184 - 35780302
Alignment:
Q  97 cattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggat 196  Q
    ||||||||||||| ||| ||| ||| || |||||||||||  || |||||||||||||| ||||||||||   || |||||| |||| ||| || |||||    
T  35780184 cattcacacaagtgggatacttaaggcttgaaatagaaatacgaggatccacttcaacagttctccatgatggtgctccaagtgtgtttatttcgaggat 35780283  T
Q  197 cacacgctcaaactcccaa 215  Q
     ||||| |||||| |||||    
T  35780284 aacacgatcaaacacccaa 35780302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 9443453 - 9443586
Alignment:
Q  81 atccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagag 180  Q
    |||||||||||||   ||||||||||||| ||| |||  || ||||||| |||||| ||| |||||||||||||||||||||| ||   ||||||||| |    
T  9443453 atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg 9443552  T
Q  181 tgtgtatctcaaggatcacacgctcaaactccca 214  Q
    ||| ||||||||||||||||||||||||| ||||    
T  9443553 tgtttatctcaaggatcacacgctcaaacaccca 9443586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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