View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_high_14 (Length: 327)
Name: NF10841_high_14
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 43110289 - 43109992
Alignment:
| Q |
18 |
attttgccttaccatgatctcaataagcctcctcacaaatgtaatctgtgtcctccaaacatgtgcaaggtgtgtatatctatctaatctaatgtgagga |
117 |
Q |
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| T |
43110289 |
attttgccttaccatgatctcaataagcctcctcacaaatgtaatctgtgtcctccaaacatgtgcaaggtgtgtatatctatctaatctaatgtgagga |
43110190 |
T |
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| Q |
118 |
gagaaattaattgaatacataatttcccaataaagataattttgaaattaattgtatttttcccatttgatgaatgaaacgatataactttattgtgnnn |
217 |
Q |
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| T |
43110189 |
gagaaattaattgaatacataatttccctataaagataattttgaaattaattgtatttttcccatttgatgaatgaaacgatataactttattgtgaaa |
43110090 |
T |
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| Q |
218 |
nnnntgttcaaatacttttcaattttattttgaattcaattttaacnnnnnnnngggaaagttgtctagtgcatcacgttttattatgtgttgtccttt |
316 |
Q |
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| T |
43110089 |
aaaatgttcaaatacttttcaattttattttgatttcaattttaacaaaaaaagggg-aagttgtctagtgcatagctttttattctgtgttgtccttt |
43109992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 26314750 - 26314678
Alignment:
| Q |
18 |
attttgccttaccatgatctcaataagcctcctcacaaatgtaatctgtgtcctccaaacatgtgcaaggtgt |
90 |
Q |
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|||||||||| | |||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||| |
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| T |
26314750 |
attttgcctttctatgatctcaacaagcctcctcacacatgtaatttgtgccctccaaacatgtgcaaggtgt |
26314678 |
T |
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