View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_high_16 (Length: 305)
Name: NF10841_high_16
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 30036561 - 30036305
Alignment:
| Q |
18 |
aacatgacctttctcactgtctgatacaagcttagagaggccaaaatctgcaacctttgctgtcaaactttcgtccagcaagatattggttgacttcaca |
117 |
Q |
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| T |
30036561 |
aacatgacctttctcactgtctgatacaagcttagagaggccaaaatctgcaacctttgctgtcaaactttcgtccagcaagatattggttgacttcaca |
30036462 |
T |
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| Q |
118 |
tctctatgtattatgggagggttggcaagttcatgtaagtatgcaagtcctctagctgagccaagagcaatacggagtctccttttccaatcaagttgat |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30036461 |
tctctatgtattatgggagggttggccagttcatgtaagtatgcaagtcctctagctgagccaagagcaatacggagtctccttttccaatcaagttgat |
30036362 |
T |
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| Q |
218 |
atccagatttccctgcaactcgcattgattgatgcagaagattttgttaatttctta |
274 |
Q |
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| T |
30036361 |
atccagatttccctgcaactcgcattgattgatgcagaagattttgttaatttctta |
30036305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 30052662 - 30052430
Alignment:
| Q |
19 |
acatgacctttctcactgtctgatacaagcttagagaggccaaaatctgcaacctttgctgtcaaactttcgtccagcaagatattggttgacttcacat |
118 |
Q |
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||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| | || |||||||||||||||||||||||||||| |
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| T |
30052662 |
acatggcctttctcactgtctgatacaagcttagacagaccaaaatctgcaacctttgcattcaaattgtcatccagcaagatattggttgacttcacat |
30052563 |
T |
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| Q |
119 |
ctctatgtattatgggagggttggcaagttcatgtaagtatgcaagtcctctagctgagccaagagcaatacggagtctccttttccaatcaagttg-at |
217 |
Q |
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| T |
30052562 |
ctctatgtattatgggagggttggccagttcatgtaagtatgcaagtcctcttgctgagctaagagcaatacgaagtctcctcttccaatcaagttgtat |
30052463 |
T |
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| Q |
218 |
atccagatttccctgcaactcgcattgattgatg |
251 |
Q |
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| T |
30052462 |
a-ccagattttcctgcaactcacattcattgatg |
30052430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 25258707 - 25258739
Alignment:
| Q |
266 |
aatttcttacaattgctatctcttcctttgcta |
298 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
25258707 |
aatttcttacaattgctatctcttcctttgcta |
25258739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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