View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_high_37 (Length: 222)
Name: NF10841_high_37
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 7713475 - 7713678
Alignment:
| Q |
1 |
attatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattgaacttcgaaagagactgtagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||| |
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| T |
7713475 |
attatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacagagctggttaaagctaacattgaactgcgaaagagactgtagg |
7713574 |
T |
|
| Q |
101 |
ttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgcccagaaaagcagggactggcccac |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
7713575 |
ttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaacctcttggaggcgcttcaacttgcccagaaattcagggattggcccac |
7713674 |
T |
|
| Q |
201 |
taag |
204 |
Q |
| |
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|||| |
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|
| T |
7713675 |
taag |
7713678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 7731152 - 7731355
Alignment:
| Q |
1 |
attatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattgaacttcgaaagagactgtagg |
100 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||| ||| | |
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| T |
7731152 |
attatgatcaaacgaactctttgcaaacttgctcaatccagtagggatagcaccacacagttggttaaagctgacattaaactgcgaaagagacggtatg |
7731251 |
T |
|
| Q |
101 |
ttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgcccagaaaagcagggactggcccac |
200 |
Q |
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| T |
7731252 |
gagccgaacgacgccggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtggggatcggcccac |
7731351 |
T |
|
| Q |
201 |
taag |
204 |
Q |
| |
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|||| |
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|
| T |
7731352 |
taag |
7731355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 7726992 - 7727195
Alignment:
| Q |
1 |
attatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattgaacttcgaaagagactgtagg |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||| |||||||||| ||| | |
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| T |
7726992 |
attatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacattaaactgcgaaagagacggtatg |
7727091 |
T |
|
| Q |
101 |
ttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgcccagaaaagcagggactggcccac |
200 |
Q |
| |
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||||| |||||| |||||| |||||||||||| ||||||||||||||||| ||| || | || |||||||| ||| ||||||| |||| ||||||| |
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| T |
7727092 |
gagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtggggatcggcccac |
7727191 |
T |
|
| Q |
201 |
taag |
204 |
Q |
| |
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|||| |
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|
| T |
7727192 |
taag |
7727195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 33 - 204
Target Start/End: Original strand, 7699162 - 7699333
Alignment:
| Q |
33 |
tcaacccagtagggatcgcaccacacagctggttaaagctgacattgaacttcgaaagagactgtaggttgccgagcgacgccggaatagcaccggataa |
132 |
Q |
| |
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||||||||| ||| || |||||||| |||||||||||||| ||||| |||| ||||||||| |||||||||||||| ||||||||||||| |||||||| |
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| T |
7699162 |
tcaacccagcaggaattgcaccacagagctggttaaagctaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagtgccggataa |
7699261 |
T |
|
| Q |
133 |
cttgttgttagacaaatcaacctcttggaggcgcttcaacttgcccagaaaagcagggactggcccactaag |
204 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||| ||||| | |||| |||||||||||| |
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| T |
7699262 |
cttgttgttagacaaatcaacctcctttaggcgcttcaacttgcctagaaaggaggggattggcccactaag |
7699333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 7739310 - 7739482
Alignment:
| Q |
1 |
attatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattgaacttcgaaagagactgtagg |
100 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| || |||| ||||||||| ||||| |
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| T |
7739310 |
attatgatcaaacgaactctttgcaaatttgctcaatccagtagggatagcaccacacagttggttaaagctgacgttaaactgggaaagagacggtagg |
7739409 |
T |
|
| Q |
101 |
ttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaact |
173 |
Q |
| |
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||||| ||||||||||||| |||||| |||||| |||||||||||||||| ||| || | || |||||||| |
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|
| T |
7739410 |
gagccgaacgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaact |
7739482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 12908344 - 12908173
Alignment:
| Q |
1 |
attatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattgaacttcgaaagagactgtagg |
100 |
Q |
| |
|
||||||||||||| |||||| | ||||| ||||||||||||| |||||||||||||| |||||| |||| ||||| |||| || |||||| ||||| |
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| T |
12908344 |
attatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagatggttagagctaacattcaactgggagagagacggtagg |
12908245 |
T |
|
| Q |
101 |
ttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaac |
172 |
Q |
| |
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|| |||||||||| |||||| |||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
12908244 |
gtggcgagcgacgctggaataacaccggataacttgttgttagacaaatcaacctcttctaagcgcttcaac |
12908173 |
T |
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