View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10841_high_41 (Length: 208)

Name: NF10841_high_41
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10841_high_41
NF10841_high_41
[»] chr2 (4 HSPs)
chr2 (14-191)||(39814527-39814704)
chr2 (21-192)||(12987348-12987526)
chr2 (46-86)||(25059704-25059744)
chr2 (46-86)||(25064503-25064543)
[»] chr1 (8 HSPs)
chr1 (14-191)||(5721847-5722024)
chr1 (17-191)||(11359346-11359521)
chr1 (51-87)||(52975688-52975724)
chr1 (47-83)||(1280528-1280564)
chr1 (50-83)||(49105523-49105556)
chr1 (51-83)||(17508545-17508577)
chr1 (45-85)||(35764138-35764178)
chr1 (51-87)||(43904365-43904401)
[»] chr5 (6 HSPs)
chr5 (17-191)||(18691034-18691209)
chr5 (17-191)||(41108975-41109150)
chr5 (14-191)||(33215091-33215267)
chr5 (110-191)||(41109725-41109806)
chr5 (29-82)||(22726480-22726534)
chr5 (50-87)||(33214546-33214583)
[»] chr8 (1 HSPs)
chr8 (14-191)||(36241094-36241271)
[»] chr3 (5 HSPs)
chr3 (14-177)||(25184726-25184890)
chr3 (41-188)||(35390487-35390641)
chr3 (18-85)||(55380341-55380408)
chr3 (51-86)||(42428432-42428467)
chr3 (51-83)||(9678749-9678781)
[»] chr7 (4 HSPs)
chr7 (14-191)||(17165870-17166051)
chr7 (59-188)||(41483079-41483215)
chr7 (47-83)||(29250494-29250530)
chr7 (129-192)||(7975991-7976054)
[»] chr4 (7 HSPs)
chr4 (14-174)||(25542328-25542489)
chr4 (14-85)||(11840870-11840941)
chr4 (14-83)||(35612-35681)
chr4 (50-85)||(48879617-48879652)
chr4 (44-85)||(40578890-40578931)
chr4 (46-83)||(40868891-40868928)
chr4 (51-79)||(45019069-45019097)
[»] chr6 (5 HSPs)
chr6 (14-86)||(10857321-10857393)
chr6 (18-108)||(832031-832122)
chr6 (129-187)||(832201-832259)
chr6 (46-86)||(23112484-23112524)
chr6 (46-86)||(23117282-23117322)
[»] scaffold0245 (1 HSPs)
scaffold0245 (47-83)||(6206-6242)
[»] scaffold0229 (1 HSPs)
scaffold0229 (47-83)||(6536-6572)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 39814527 - 39814704
Alignment:
Q  14 aaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814527 aaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttata 39814626  T
Q  114 tcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39814627 tcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatctgcatttattca 39814704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 12987526 - 12987348
Alignment:
Q  21 gggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttg-gtacttttctgcagttactttcttatatcaata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||| | ||||||||    
T  12987526 gggcattgggtattttgtatgtgggttggtttgggagagactaggctctctgattcctagaggttgattacttttctgcagttactttcctgtatcaata 12987427  T
Q  120 ataatagat------cattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcat 192  Q
    |||||| ||      |||||| |||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||    
T  12987426 ataatacatcacgtgcattcccttattattatgctataatctcccaaataccatagaattatcattggtatttattcat 12987348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 25059704 - 25059744
Alignment:
Q  46 ttggtttgggagagactaggctctctaattcctagaggttg 86  Q
    |||||||||||||  ||||||||||||| ||||||||||||    
T  25059704 ttggtttgggagattctaggctctctaagtcctagaggttg 25059744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 25064503 - 25064543
Alignment:
Q  46 ttggtttgggagagactaggctctctaattcctagaggttg 86  Q
    |||||||||||||  ||||||||||||| ||||||||||||    
T  25064503 ttggtttgggagattctaggctctctaagtcctagaggttg 25064543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 5721847 - 5722024
Alignment:
Q  14 aaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5721847 aaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttata 5721946  T
Q  114 tcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5721947 tcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatcggtatttattca 5722024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 11359521 - 11359346
Alignment:
Q  17 gggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatc 115  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11359521 gggaaggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcttatatc 11359422  T
Q  116 aataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattca 191  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11359421 aataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatcatctgtatttattca 11359346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 52975724 - 52975688
Alignment:
Q  51 ttgggagagactaggctctctaattcctagaggttgg 87  Q
    |||||||||||||||||||||||||||||||||||||    
T  52975724 ttgggagagactaggctctctaattcctagaggttgg 52975688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 1280528 - 1280564
Alignment:
Q  47 tggtttgggagagactaggctctctaattcctagagg 83  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1280528 tggtttgggagagactaggctctctgattcctagagg 1280564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 49105523 - 49105556
Alignment:
Q  50 tttgggagagactaggctctctaattcctagagg 83  Q
    |||||||||||||||||||||| |||||||||||    
T  49105523 tttgggagagactaggctctctgattcctagagg 49105556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 17508545 - 17508577
Alignment:
Q  51 ttgggagagactaggctctctaattcctagagg 83  Q
    ||||||||||| |||||||||||||||||||||    
T  17508545 ttgggagagacaaggctctctaattcctagagg 17508577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 35764138 - 35764178
Alignment:
Q  45 gttggtttgggagagactaggctctctaattcctagaggtt 85  Q
    |||||||||||||||||||| |||| ||||||||| |||||    
T  35764138 gttggtttgggagagactagactctataattcctaaaggtt 35764178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 43904365 - 43904401
Alignment:
Q  51 ttgggagagactaggctctctaattcctagaggttgg 87  Q
    ||||||||||||||||||||||||| | |||||||||    
T  43904365 ttgggagagactaggctctctaatttcaagaggttgg 43904401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 4e-83; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 18691034 - 18691209
Alignment:
Q  17 gggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatc 115  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18691034 gggaaggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcttatatc 18691133  T
Q  116 aataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattca 191  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  18691134 aataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatcatcggtatttattca 18691209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 41108975 - 41109150
Alignment:
Q  17 gggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatc 115  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41108975 gggaaggcattgggtattttgtatgtgggttggtttgggagagactgggctctctaattcctagaggttggttacttttctgcagttactttcttatatc 41109074  T
Q  116 aataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattca 191  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  41109075 aataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatcatcggtatttattca 41109150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 33215267 - 33215091
Alignment:
Q  14 aaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttgg-tacttttctgcagttactttcttat 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | |    
T  33215267 aaagggagggcattgggtaatttgtatgtgggttggtttgggagagactaggctctctaatttctagaggttggttacttttctgcagttactttcatgt 33215168  T
Q  113 atcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattca 191  Q
    ||||||||||  | |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  33215167 atcaataata--acatcattcccttattattatgcaataatctcccaaataccattgaattatcatcggtatttattca 33215091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 41109725 - 41109806
Alignment:
Q  110 tatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  41109725 tatatcaataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatcatcggtatttattca 41109806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 22726480 - 22726534
Alignment:
Q  29 ggtattttgtatgtgggtt-ggtttgggagagactaggctctctaattcctagag 82  Q
    ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||    
T  22726480 ggtatttcgtatgttggtttggtttgggagagactaggctctctaattcctagag 22726534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 33214546 - 33214583
Alignment:
Q  50 tttgggagagactaggctctctaattcctagaggttgg 87  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  33214546 tttgggagagactagggtctctaattcctaaaggttgg 33214583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 36241271 - 36241094
Alignment:
Q  14 aaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttgg-tacttttctgcagttactttcttat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |    
T  36241271 aaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcctgt 36241172  T
Q  113 atcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattca 191  Q
    ||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||  |||||||||||    
T  36241171 atcaataataatacatcattcccttattattatgcaat-atctcccaaataccatagaattatcattggtatttattca 36241094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 2e-69; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 25184726 - 25184890
Alignment:
Q  14 aaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttgg-tacttttctgcagttactttcttat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  25184726 aaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcctat 25184825  T
Q  113 atcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatca 177  Q
    ||||||||||| | |||||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  25184826 atcaataataaaacatcattcgcttattattatgcaataatctcccaaataccatagatttatca 25184890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 41 - 188
Target Start/End: Original strand, 35390487 - 35390641
Alignment:
Q  41 gtgggttggtttgggagagactaggctctctaattcctagaggttgg-tacttttctgcagttactttcttatatcaataataatagat------cattc 133  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||| | | |||||||||||||| ||      ||||     
T  35390487 gtgggttggtttgggagagactaggctctctaactcctaaaggttggttacctttctgcagttacttacatgtatcaataataatacatcacatgcattt 35390586  T
Q  134 ctttattattatgcaataatctcccaaataccatagaattatcatctgtatttat 188  Q
    | |||||||| | ||||||||| ||||||||||||||||||||||  ||||||||    
T  35390587 ccttattattttacaataatctaccaaataccatagaattatcattggtatttat 35390641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 55380408 - 55380341
Alignment:
Q  18 ggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggtt 85  Q
    |||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55380408 ggagggcattagttattttatatgttggttggtttgggagagactaggctctctaattcctagaggtt 55380341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 42428432 - 42428467
Alignment:
Q  51 ttgggagagactaggctctctaattcctagaggttg 86  Q
    ||||||||||||||||||||||||||||||||||||    
T  42428432 ttgggagagactaggctctctaattcctagaggttg 42428467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 9678749 - 9678781
Alignment:
Q  51 ttgggagagactaggctctctaattcctagagg 83  Q
    ||||||||||||||||||||| |||||||||||    
T  9678749 ttgggagagactaggctctctgattcctagagg 9678781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 9e-69; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 17166051 - 17165870
Alignment:
Q  14 aaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttgg-tacttttctgcagttactttcttat 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |    
T  17166051 aaagggagggcattgggtagtttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcctgt 17165952  T
Q  113 ---atcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattca 191  Q
       ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  17165951 atgatcaataataatatatcattcccttattattatgcaataatctcccaaataccatagaattatcatcgatatttattca 17165870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 41483079 - 41483215
Alignment:
Q  59 gactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatca------ttcctttattattatgcaata 151  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||| |||||||||| ||||      |||| ||||||||||||||||    
T  41483079 gactaggctctctaattcctagaggtaggttacttttctgcagttactttcctgtatgaataataatacatcacgtgcattcccttattattatgcaata 41483178  T
Q  152 atctcccaaataccatagaattatcatctgtatttat 188  Q
    |||||||||||||||||||||||||||  ||||||||    
T  41483179 atctcccaaataccatagaattatcattggtatttat 41483215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 29250494 - 29250530
Alignment:
Q  47 tggtttgggagagactaggctctctaattcctagagg 83  Q
    ||||||||||||||||||||||||| |||||||||||    
T  29250494 tggtttgggagagactaggctctctgattcctagagg 29250530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 7975991 - 7976054
Alignment:
Q  129 cattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcat 192  Q
    |||||||| |||||| |||||||||||||||| |||   |||||||||||  ||||||||||||    
T  7975991 cattccttgattattttgcaataatctcccaagtactgaagaattatcattggtatttattcat 7976054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 25542489 - 25542328
Alignment:
Q  14 aaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttat 112  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||| | |    
T  25542489 aaagggagggcattgggtattttttatgtgggttggtttgggagggactaggctctctaattgctagaggttggttacttttatgcagttactttcctgt 25542390  T
Q  113 atcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaatta 174  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  25542389 atcaataataatacatcattcccttattattatgcaataatctcccaaataccatagaatta 25542328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 11840870 - 11840941
Alignment:
Q  14 aaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggtt 85  Q
    |||||||||||| |||||||||||||| | | |||||||||||||||||||| |||||||||||||||||||    
T  11840870 aaagggagggcactgggtattttgtatatagtttggtttgggagagactaggttctctaattcctagaggtt 11840941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 35681 - 35612
Alignment:
Q  14 aaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagagg 83  Q
    |||||||| || || ||||||||||| || ||||||||||||| ||||||  | ||||||||||||||||    
T  35681 aaagggagagctttaggtattttgtacgttggttggtttgggatagactacaccctctaattcctagagg 35612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 48879652 - 48879617
Alignment:
Q  50 tttgggagagactaggctctctaattcctagaggtt 85  Q
    |||||||||||||||||||||||| |||||||||||    
T  48879652 tttgggagagactaggctctctaagtcctagaggtt 48879617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 40578931 - 40578890
Alignment:
Q  44 ggttggtttgggagagactaggctctctaattcctagaggtt 85  Q
    |||||| ||||||||||||| |||||||||||||||| ||||    
T  40578931 ggttgggttgggagagactaagctctctaattcctagtggtt 40578890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 40868891 - 40868928
Alignment:
Q  46 ttggtttgggagagactaggctctctaattcctagagg 83  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  40868891 ttggtttgagagagaataggctctctaattcctagagg 40868928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 45019097 - 45019069
Alignment:
Q  51 ttgggagagactaggctctctaattccta 79  Q
    |||||||||||||||||||||||||||||    
T  45019097 ttgggagagactaggctctctaattccta 45019069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 9e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 10857393 - 10857321
Alignment:
Q  14 aaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttg 86  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10857393 aaagggagggcattgagtattttgtatgttggttggtttgggagagactaggctctctaattcctagaggttg 10857321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 832031 - 832122
Alignment:
Q  18 ggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagagg-ttggtacttttctgcagttactttc 108  Q
    |||||||| || ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| || |||| |||||||||||||    
T  832031 ggagggcaatgagtattttgtatgttggttggtttgggagagactaggctctataattcctagaggtttgttagttttatgcagttactttc 832122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 832201 - 832259
Alignment:
Q  129 cattcctttattattatgcaataatctcccaaataccatagaattatcatctgtattta 187  Q
    |||||| |||||||||| |||||||| |||||||| ||||||||||||||  |||||||    
T  832201 cattcccttattattatccaataatcccccaaatatcatagaattatcattggtattta 832259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 23112484 - 23112524
Alignment:
Q  46 ttggtttgggagagactaggctctctaattcctagaggttg 86  Q
    |||||||||||||  ||||||||||||| ||||||||||||    
T  23112484 ttggtttgggagattctaggctctctaagtcctagaggttg 23112524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 23117282 - 23117322
Alignment:
Q  46 ttggtttgggagagactaggctctctaattcctagaggttg 86  Q
    |||||||||||||  ||||||||||||| ||||||||||||    
T  23117282 ttggtttgggagattctaggctctctaagtcctagaggttg 23117322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 6206 - 6242
Alignment:
Q  47 tggtttgggagagactaggctctctaattcctagagg 83  Q
    ||||||||||||||||||||||||| |||||||||||    
T  6206 tggtttgggagagactaggctctctgattcctagagg 6242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 6536 - 6572
Alignment:
Q  47 tggtttgggagagactaggctctctaattcctagagg 83  Q
    ||||||||||||||||||||||||| |||||||||||    
T  6536 tggtttgggagagactaggctctctgattcctagagg 6572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University