View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_1 (Length: 717)
Name: NF10841_low_1
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 639; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 1 - 651
Target Start/End: Original strand, 40145215 - 40145865
Alignment:
| Q |
1 |
ctcatcgtcacaacccgttctccaatggcgtgtcctcggcctacaaatacaatgtcaaatcgttaaaaatcaaaattcattgtggcaaatacgtcgtcca |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40145215 |
ctcatcgtcacaactcgttctccaatggcgtgtcctcggcctacaaatacaatgtcaaatcgttaaaaatcaaaattcattgtggcaaatacgtcgtcca |
40145314 |
T |
|
| Q |
101 |
gactcttttataccatttccttttttgattagccccacaaatacttggccttttggaatttcattttgagttctatgttatcagtgatcgttgtcaacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40145315 |
gactcttttataccatttccttttttgattagccccacaaatacttggccttttggaatttcattttgagttctatgttatcagtgatcgttgtcaacct |
40145414 |
T |
|
| Q |
201 |
caacatcatctactctattccaccctacaaatgactcttatacatgtgattttatacaagtcaaagaattggtctatatgttgggatttatggattcttc |
300 |
Q |
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| T |
40145415 |
caacatcatcttctctattccaccctacaaatgactcttatacatgtgattttatacaagtcaaagaattggtctatatgttgggatttatggattcttc |
40145514 |
T |
|
| Q |
301 |
agcatcatcaaatggaaagagagtgtaaaacacagtatctagatactaatgcttcaagaagttatcgcaaagaaacacatttgtgatttgttctaggata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40145515 |
agcatcatcaaatggaaagagagtgtaaaacacagtatctagatactaatgcttcaagaagttatcgcaaagaaacacatttgtgatttgttctaggata |
40145614 |
T |
|
| Q |
401 |
atatacttcagaatccattgtaaacatcatcaaaaccttctacaacatgcaacgctgtccgcacaattttgaaaggcatgccaatttgattcggtatctg |
500 |
Q |
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| T |
40145615 |
atatacttcagaatccattgtaaacatcatcaaaaccttctacaacatgcaacgctgtccgcacaattttgaaaggcatgccaatttgattcggtatctg |
40145714 |
T |
|
| Q |
501 |
attgacatactacatgtgcagaagaacaagccacgcctttgaataaaattcaagtttaggtgttgtttttaaaaacaatttatacacaacacacatatta |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40145715 |
attgacatactacatgtgcagaagaacaagccacgcctttgaataaaattcaagtttaggtgttgtttttaaaaacaatttatacacaacacacatatta |
40145814 |
T |
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| Q |
601 |
gatatataaaataagtttttaatctcattaattccttagtttgagtttctc |
651 |
Q |
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| T |
40145815 |
gatatataaaatatgtttttaatctcattaattccttagtttgagtttctc |
40145865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 674 - 715
Target Start/End: Original strand, 40145889 - 40145930
Alignment:
| Q |
674 |
ttgtgtaaccaaaagaactcactcgtcgtctctgcttctcca |
715 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||| |
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| T |
40145889 |
ttgtgtaaccaaaataactcactcgtcgtctcttcttctcca |
40145930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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