View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_104 (Length: 237)
Name: NF10841_low_104
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_104 |
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| [»] scaffold0077 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39604684 - 39604917
Alignment:
| Q |
1 |
tttgctgagtcgcttaagtctgtgttgtttttgctttcttcgttttatgttgctgtctgtaaggttcctttgtgttacttgtttttct-----------t |
89 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
39604684 |
tttgctgagtcacttaagtctgtgttgtttttgctttcttcgttttatgctgctgtctgtaaggttcctttgtgttacttgtttttctttgttggttctt |
39604783 |
T |
|
| Q |
90 |
gtttgtatataagtggcagattgcctatttgtaggtttggttttgggtttttggaggcctgttttgctgccggaggcgctcccttttgtttagtgtgata |
189 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39604784 |
gtttgtatataagtggcggattgcctatttgtaggtttggttttgggtttttggagacctgttttgctgccggaggcgctcccttttgtttagtgtgata |
39604883 |
T |
|
| Q |
190 |
ataaatttttgctgtcatagaaaaaagtgccgcc |
223 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
39604884 |
ataaatttttgctgtcatagaaaaaagtgccgcc |
39604917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 40793661 - 40793439
Alignment:
| Q |
1 |
tttgctgagtcgcttaagtctgtgttgtttttgctttcttcgttttatgttgctgtctgtaaggttcctttgtgttacttgtttttctt----------- |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40793661 |
tttgctgagtcgcttaagtctgtgttgtttttgctatctttgttt-atgctgctgtctgtaaggttcctttgtgttacttgtttttctttgttggttctt |
40793563 |
T |
|
| Q |
90 |
gtttgtatataagtggcagattgcctatttgtaggtttggttttgggtttttggaggcctgttttgctgccggaggcgctcccttttgtttagtgtgata |
189 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
40793562 |
gtttgtatataagtggcggattgcatatttgtaggtttggttttgggtttttggaggcctgatttgctgctggaggcgctcccttttgtttagtgtgata |
40793463 |
T |
|
| Q |
190 |
ataaatttttgctgtcatagaaaa |
213 |
Q |
| |
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||||||||||| |||||||||||| |
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| T |
40793462 |
ataaatttttgttgtcatagaaaa |
40793439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 53484 - 53261
Alignment:
| Q |
1 |
tttgctgagtcgcttaagtctgtgttgtttttgctttcttcgttttatgttgctgtctgtaaggttcctttgtgttacttgtttttctt----------- |
89 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| |||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
53484 |
tttgctgagtcgcttaagtctgtgttattttttctttctttgttttatgctgctgtctgtaaggttactttgtgttacttgtttttctttgttggttctt |
53385 |
T |
|
| Q |
90 |
gtttgtatataagtggcagattgcctatttgtaggtttggttttgggtttttggaggcctgttttgctgccggaggcgctcccttttgtttagtgtgata |
189 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
53384 |
gtttatatataagtggtggattgcctatttgtaggtttggttttgggtttttggaggcctgttttgctgttggaggcgctctcttttgtttagtgtgata |
53285 |
T |
|
| Q |
190 |
ataaatttttgctgtcatagaaaa |
213 |
Q |
| |
|
|||||| ||||||||||||||||| |
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|
| T |
53284 |
ataaatatttgctgtcatagaaaa |
53261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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