View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_106 (Length: 231)
Name: NF10841_low_106
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_106 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 42789485 - 42789290
Alignment:
| Q |
18 |
gaacatgaaagtgagtggagtgctgatcacaaacccttcaaacccgttaggtataacagttaaacgttcagttctagaagaaattcttgactttgtgaca |
117 |
Q |
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| T |
42789485 |
gaacatgaaagtgagtggagtgctgatcacaaacccttcaaacccattaggtataacagttaaacgttcagttctagaagagattcttgactttgtgaca |
42789386 |
T |
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| Q |
118 |
aaaaagaacatccaccttatctcagacgaaatctactcaggatcagtgtttaattcctctgagtttgtaagcatagcagagattctcgaaactcgt |
213 |
Q |
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| T |
42789385 |
aaaaagaacatccaccttatctcagacgaaatctactcaggatcagtgtttaattcctctgagtttgtaagcatagcagagattcttgaaactcgt |
42789290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 42799023 - 42798828
Alignment:
| Q |
18 |
gaacatgaaagtgagtggagtgctgatcacaaacccttcaaacccgttaggtataacagttaaacgttcagttctagaagaaattcttgactttgtgaca |
117 |
Q |
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| T |
42799023 |
gaacatgaaagtgagtggagtgctgatcacaaacccttcaaacccattaggtataacagttaaacgttcagttctagaagagattcttgactttgtgaca |
42798924 |
T |
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| Q |
118 |
aaaaagaacatccaccttatctcagacgaaatctactcaggatcagtgtttaattcctctgagtttgtaagcatagcagagattctcgaaactcgt |
213 |
Q |
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| T |
42798923 |
aaaaagaacatccaccttatctcagacgaaatctactcaggatcagtgtttaattcctctgagtttgtaagcatagcagagattcttgaaactcgt |
42798828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 34567096 - 34567012
Alignment:
| Q |
80 |
aacgttcagttctagaagaaattcttgactttgtgacaaaaaagaacatccaccttatctcagacgaaatctactcaggatcagt |
164 |
Q |
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||||||||||||| || || ||||| |||| ||||| |||||||| |||||| ||||||||||||||||||| || ||||| |
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| T |
34567096 |
aacgttcagttctcgaggacattctgaacttcgtgactcgcaagaacatacaccttgtctcagacgaaatctactcgggctcagt |
34567012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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