View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10841_low_109 (Length: 228)

Name: NF10841_low_109
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10841_low_109
NF10841_low_109
[»] chr6 (11 HSPs)
chr6 (1-221)||(30954633-30954853)
chr6 (1-203)||(30944391-30944593)
chr6 (1-213)||(30985707-30985916)
chr6 (1-213)||(30991871-30992080)
chr6 (2-212)||(31223892-31224102)
chr6 (1-202)||(30960397-30960598)
chr6 (1-84)||(31145988-31146071)
chr6 (1-84)||(31190046-31190129)
chr6 (3-68)||(31131740-31131805)
chr6 (1-66)||(31201853-31201918)
chr6 (1-68)||(31172301-31172368)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30954853 - 30954633
Alignment:
Q  1 tttctttatttctgaaaatttataccttttttgtaatagtgctctatgatcttttaaaaattcttcaacgtttatatcattctttgtcttaaacagaaac 100  Q
    |||||||||||||||||||||||| |||||||| | ||| |||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  30954853 tttctttatttctgaaaatttatatcttttttgcactagagctccatggtcttttaaaaatgcttcaatgtttatatcattctttgtcttaaacagaaac 30954754  T
Q  101 ttcacttgtagtatcaatgactcgcctttataccaacaaattatgatgcacatcagcaatgctaccattgctgcaattccaacacctgtcgttataataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30954753 ttcacttgtagtatcaatgactcgcctttataccaacaaattatgatgcacatcagcaatgctaccattgctgcaattccaacacctgttgttataataa 30954654  T
Q  201 gaattatcttattctgtgctg 221  Q
    ||||||||||||| |||||||    
T  30954653 gaattatcttattttgtgctg 30954633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 30944593 - 30944391
Alignment:
Q  1 tttctttatttctgaaaatttataccttttttgtaatagtgctctatgatcttttaaaaattcttcaacgtttatatcattctttgtcttaaacagaaac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||     
T  30944593 tttctttatttctgaaaatttatatcttttttgtaatagtgctctatgatcttttaaaaattcttcaatgtttatatcattctttgtcttaaaccaaaat 30944494  T
Q  101 ttcacttgtagtatcaatgactcgcctttataccaacaaattatgatgcacatcagcaatgctaccattgctgcaattccaacacctgtcgttataataa 200  Q
    || || ||||||||| |||||| |||| |||| ||||| ||||||||||||||||||||||| || |||||| || |||||||||||||  ||||||| |    
T  30944493 tttacatgtagtatcgatgacttgcctctataacaacagattatgatgcacatcagcaatgcaactattgctacacttccaacacctgtttttataatga 30944394  T
Q  201 gaa 203  Q
    |||    
T  30944393 gaa 30944391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 30985916 - 30985707
Alignment:
Q  1 tttctttatttctgaaaatttataccttttttgtaatagtgctctatgatcttttaaaaattcttcaacgtttatatcattctttgtcttaaacagaaac 100  Q
    |||||||||||||||||| ||||| |||||||| |||||  ||| ||| |||||||||||| |||||| |||||||||||||||||||||||||  |||     
T  30985916 tttctttatttctgaaaacttatatcttttttgcaatagaactccatggtcttttaaaaatgcttcaatgtttatatcattctttgtcttaaaccaaaat 30985817  T
Q  101 ttcacttgtagtatcaatgactcgcctttataccaacaaattatgatgcacatcagcaatgctaccattgctgcaattccaacacctgtcgttataataa 200  Q
    || ||   ||||||| |||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||  |||| |||||    
T  30985816 tttac---tagtatcgatgacttgcctctataacaacagattatgatgcacatcagcaatgctaccattgctgcacttccaacacctgctgttagaataa 30985720  T
Q  201 gaattatcttatt 213  Q
    |||||||||||||    
T  30985719 gaattatcttatt 30985707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 30992080 - 30991871
Alignment:
Q  1 tttctttatttctgaaaatttataccttttttgtaatagtgctctatgatcttttaaaaattcttcaacgtttatatcattctttgtcttaaacagaaac 100  Q
    |||||||||||||||||| ||||| |||||||| |||||  ||| ||| |||||||||||| |||||| |||||||||||||||||||||||||  |||     
T  30992080 tttctttatttctgaaaacttatatcttttttgcaatagaactccatggtcttttaaaaatgcttcaatgtttatatcattctttgtcttaaaccaaaat 30991981  T
Q  101 ttcacttgtagtatcaatgactcgcctttataccaacaaattatgatgcacatcagcaatgctaccattgctgcaattccaacacctgtcgttataataa 200  Q
    || ||   ||||||| |||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||  |||| |||||    
T  30991980 tttac---tagtatcgatgacttgcctctataacaacagattatgatgcacatcagcaatgctaccattgctgcacttccaacacctgctgttagaataa 30991884  T
Q  201 gaattatcttatt 213  Q
    |||||||||||||    
T  30991883 gaattatcttatt 30991871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 31224102 - 31223892
Alignment:
Q  2 ttctttatttctgaaaatttataccttttttgtaatagtgctctatgatcttttaaaaattcttcaacgtttatatcattctttgtcttaaacagaaact 101  Q
    ||||||||||||||| ||||||| ||||| || ||||| |||| |||||||||||||||| |||||| |||| |||||||||||||| |||||  | |      
T  31224102 ttctttatttctgaatatttatatcttttctgcaatagagctccatgatcttttaaaaatgcttcaatgtttttatcattctttgtcctaaaccaagatg 31224003  T
Q  102 tcacttgtagtatcaatgactcgcctttataccaacaaattatgatgcacatcagcaatgctaccattgctgcaattccaacacctgtcgttataataag 201  Q
    | |||||| |||| ||||||| |||| || |  |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| ||  ||    
T  31224002 ttacttgttgtattaatgacttgcctctaaaataacaaattgtgatgcacatcagcaatgctaccattgctgcacttccaacacctgttgttagaagtag 31223903  T
Q  202 aattatcttat 212  Q
    |||||||||||    
T  31223902 aattatcttat 31223892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 30960598 - 30960397
Alignment:
Q  1 tttctttatttctgaaaatttataccttttttgtaatagtgctctatgatcttttaaaaattcttcaacgtttatatcattctttgtcttaaacagaaac 100  Q
    |||||||||||||||||||||||| |||||||| | ||| |||| ||||||||||| |||| |||||| |||||||||||| ||||||||| |  ||||     
T  30960598 tttctttatttctgaaaatttatatcttttttgcagtagagctccatgatcttttagaaatgcttcaatgtttatatcattatttgtcttagatggaaat 30960499  T
Q  101 ttcacttgtagtatcaatgactcgcctttataccaacaaattatgatgcacatcagcaatgctaccattgctgcaattccaacacctgtcgttataataa 200  Q
    || |||||||| ||  ||| || |||| || | ||| |||||||||||| ||| ||||  | | ||||||||||| ||||||||||||| |||| |||||    
T  30960498 tttacttgtagcatagatggcttgcctctaaaacaataaattatgatgcccattagcagggttgccattgctgcacttccaacacctgttgttagaataa 30960399  T
Q  201 ga 202  Q
    ||    
T  30960398 ga 30960397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 31145988 - 31146071
Alignment:
Q  1 tttctttatttctgaaaatttataccttttttgtaatagtgctctatgatcttttaaaaattcttcaacgtttatatcattctt 84  Q
    |||||||||||||||| ||||||| ||||| || ||||| |||| |||||||||||||||| ||||||  ||| ||||||||||    
T  31145988 tttctttatttctgaatatttatatcttttctgcaatagagctccatgatcttttaaaaatgcttcaatatttgtatcattctt 31146071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 31190046 - 31190129
Alignment:
Q  1 tttctttatttctgaaaatttataccttttttgtaatagtgctctatgatcttttaaaaattcttcaacgtttatatcattctt 84  Q
    |||||||| ||||||| ||||||| ||||| || ||||| |||| |||||||||||||||| ||||||  ||| ||||||||||    
T  31190046 tttctttagttctgaatatttatatcttttctgcaatagagctccatgatcttttaaaaatgcttcaatatttgtatcattctt 31190129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 31131740 - 31131805
Alignment:
Q  3 tctttatttctgaaaatttataccttttttgtaatagtgctctatgatcttttaaaaattcttcaa 68  Q
    ||||||||||  | |||||||| ||||| || ||||| ||||||||||||||||||||| ||||||    
T  31131740 tctttatttcaaagaatttatatcttttctgcaatagagctctatgatcttttaaaaatgcttcaa 31131805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 31201853 - 31201918
Alignment:
Q  1 tttctttatttctgaaaatttataccttttttgtaatagtgctctatgatcttttaaaaattcttc 66  Q
    |||||||||||||||| ||||||| ||||| || || || |||| |||||||||||||||| ||||    
T  31201853 tttctttatttctgaatatttatatcttttctgcaacagagctccatgatcttttaaaaatgcttc 31201918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 31172301 - 31172368
Alignment:
Q  1 tttctttatttctgaaaatttataccttttttgtaatagtgctctatgatcttttaaaaattcttcaa 68  Q
    |||||||||||| ||||||||||| ||||| || ||||  |||| ||| |||||||||||| ||||||    
T  31172301 tttctttatttcagaaaatttatatcttttctgcaataaagctccatggtcttttaaaaatgcttcaa 31172368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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