View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_110 (Length: 227)
Name: NF10841_low_110
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_110 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 32098985 - 32098769
Alignment:
| Q |
11 |
gcactcacttgaagtgcatgtttgcaactagattcatctagtatttatgaaatcttagtacacactttaacataaagaaacagatacaagtgaaaaatat |
110 |
Q |
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| T |
32098985 |
gcactcacttgaagtgcatgtttgcaactagattcatctagtatttatgaaatcttagtacacactttaacataaagaaacagatacaagtgaaaaatat |
32098886 |
T |
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| Q |
111 |
gtaaccaaaatttaaccagtgttctgcatgccagcagcaatacccttcatggtaagaatgagtgtgtcttccaaaccaggagcatattcacttgttggat |
210 |
Q |
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| T |
32098885 |
gtaaccaaaatttaaccagtgttctgcatgccagcagcaatacccttcatggtaagaatgagtgtgtcttccaaaccaggagcatattcacttgttggat |
32098786 |
T |
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| Q |
211 |
tcaatgttacaagttca |
227 |
Q |
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| T |
32098785 |
tcaatgttacaagttca |
32098769 |
T |
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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 39535973 - 39536060
Alignment:
| Q |
124 |
aaccagtgttctgcatgccagcagcaatacccttcatggtaagaatgagtgtgtcttccaaaccaggagcatattcacttgttggatt |
211 |
Q |
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| T |
39535973 |
aaccagtgttttgcatgccagcagctatacccttcattgtcaaaataagggtatcctcaagaccaggagcatactcactttttggatt |
39536060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 22569086 - 22568979
Alignment:
| Q |
120 |
atttaaccagtgttctgcatgccagcagcaatacccttcatggtaagaatgagtgtgtcttccaaaccaggagcatattcacttgttggattcaatgtta |
219 |
Q |
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| T |
22569086 |
atttaaccagtgttttgcaagccagcagcaatacccttcatggtgagaatgagggtgtcttccaaaccaggtgcatattcacttgttgggttcagtgtta |
22568987 |
T |
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| Q |
220 |
caagttca |
227 |
Q |
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| T |
22568986 |
caagttca |
22568979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 30905282 - 30905362
Alignment:
| Q |
122 |
ttaaccagtgttctgcatgccagcagcaatacccttcatggtaagaatgagtgtgtcttccaaaccaggagcatattcact |
202 |
Q |
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| T |
30905282 |
ttaaccagtgttctgcatgccagcagctatacccttcattgtcagaataagggtatcctccaaaccaggagcatagtcact |
30905362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 1551191 - 1551277
Alignment:
| Q |
122 |
ttaaccagtgttctgcatgccagcagcaatacccttcatggtaagaatgagtgtgtcttccaaaccaggagcatattcacttgttgg |
208 |
Q |
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| T |
1551191 |
ttaaccagtgttttgcataccagcagctatacccttcattgtcaaaataagggtatcctcaagaccaggagcatactcactttttgg |
1551277 |
T |
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