View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_111 (Length: 226)
Name: NF10841_low_111
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_111 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 34675659 - 34675434
Alignment:
| Q |
1 |
gagtaaaatccatttccatcaacatttccattaccaaatcttgaactaaactgtctttgagattgatgaaacgaagccggaacaacaagaggaggaagag |
100 |
Q |
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| T |
34675659 |
gagtaaaatccatttccatcaacatttccattaccaaatcttgaactaaactgtctttgagattgatgaaacgaagccggaacaacaagaggaggaagag |
34675560 |
T |
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| Q |
101 |
gtggaagagaggtattcggagagatttcattgtaagcaaagcgaagaagatcggcattagcagaatcaagttccttttgaagtctctgaacttgtctctg |
200 |
Q |
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| T |
34675559 |
gtggaagagaggaattcggagagatttcattgtaagcaaagcgaagaagatcggcattagcagaatcaagttccttttgaagtctctgaacttgtctctg |
34675460 |
T |
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| Q |
201 |
aaggaaagagatagcaccaacacaac |
226 |
Q |
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| T |
34675459 |
aaggaaagagatagcaccaacacaac |
34675434 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 43583509 - 43583437
Alignment:
| Q |
140 |
agcgaagaagatcggcattagcagaatcaagttccttttgaagtctctgaacttgtctctgaaggaaagagat |
212 |
Q |
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| T |
43583509 |
agcgaagaagatcggtgttagcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaagagat |
43583437 |
T |
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