View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_113 (Length: 225)
Name: NF10841_low_113
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_113 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 47651297 - 47651100
Alignment:
| Q |
18 |
actaaaaggggaagaattaagtattaatgtaacaaatttgtccgtttaatgttttgtggtgactgtggtttggttatgtctgggggttctggccttgggt |
117 |
Q |
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| T |
47651297 |
actaaaaggggaagaattaagtattaatgtaacaaatttgtccgtttaatgttttgtggtgactgtggtttggttatgtctgggggttctggccttgggt |
47651198 |
T |
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| Q |
118 |
ctttagctctctagcagtttggtgcaggtttttactggtgtcgcaatatcaaagttagtgtaatgttcggtttaagtatctctatgtgtctgtgcttc |
215 |
Q |
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| T |
47651197 |
ctttagctctctagcagtttggtgcaggtttttactggtgtcgcaatatcaaagttagtgtaatgttcggtttaagtatctctatgtgtcggtgcttc |
47651100 |
T |
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Target: scaffold0031 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 93066 - 93015
Alignment:
| Q |
19 |
ctaaaaggggaagaattaagtattaatgtaacaaatttgtccgtttaatgtt |
70 |
Q |
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||||||||| ||||||| | |||||||||||||||||||| |||||||||| |
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| T |
93066 |
ctaaaagggaaagaattgggaattaatgtaacaaatttgtctgtttaatgtt |
93015 |
T |
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