View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_122 (Length: 218)
Name: NF10841_low_122
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_122 |
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| [»] scaffold0019 (2 HSPs) |
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| [»] scaffold0038 (3 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 58589 - 58666
Alignment:
| Q |
14 |
cataggagaaggaagaggaggaagagatggatgattgaagcatagccatgagagttgagaataaaaaggaagtaagaa |
91 |
Q |
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| T |
58589 |
cataggagaaggaagaggaggaagagatggatgattgaagcatagccatgacagtagagaataaaaaggaagtaagaa |
58666 |
T |
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Target: scaffold0019; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 138
Target Start/End: Original strand, 58674 - 58704
Alignment:
| Q |
108 |
gagtgtatatcaaaataaatcaagaagtgac |
138 |
Q |
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| T |
58674 |
gagtgtatatcaaaataaatcaagaagtgac |
58704 |
T |
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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 28180994 - 28180900
Alignment:
| Q |
14 |
cataggagaaggaagaggaggaagagatggatgattgaagcatagccatgagagttgagaataaaaaggaagtaagaagagtatgaagaagtaaga |
109 |
Q |
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| T |
28180994 |
cataggagaaggaagaggatgaggagacggatgattgaagcatagccatgagaatagagaataaaaaggaagtaagaatagtatg-agaagtaaga |
28180900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 28185246 - 28185152
Alignment:
| Q |
14 |
cataggagaaggaagaggaggaagagatggatgattgaagcatagccatgagagttgagaataaaaaggaagtaagaagagtatgaagaagtaaga |
109 |
Q |
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| T |
28185246 |
cataggagaaggaagaggatgaggagacggatgattgaagcatagccatgagaatagagaataaaaaggaagtaagaatagtatg-agaagtaaga |
28185152 |
T |
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Target: chr6; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 28325361 - 28325276
Alignment:
| Q |
14 |
cataggagaaggaagaggaggaagagatggatgattgaagcatagccatgagagttgagaataaaaaggaagtaagaagagtatga |
99 |
Q |
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| T |
28325361 |
cataggaaaaggaagaggaggaagagatggatgattgaagtagagccatgagagtagtgaataaagaggaaatgagaagagtatga |
28325276 |
T |
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Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 28234444 - 28234359
Alignment:
| Q |
14 |
cataggagaaggaagaggaggaagagatggatgattgaagcatagccatgagagttgagaataaaaaggaagtaagaagagtatga |
99 |
Q |
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| T |
28234444 |
cataggagaaagaagaagagggggggacggatgattgaagcagagccatgagagtagagaacaaaaaggaagtaagaagagtatga |
28234359 |
T |
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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 28298020 - 28298057
Alignment:
| Q |
14 |
cataggagaaggaagaggaggaagagatggatgattga |
51 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28298020 |
cataggagaaggaagaggaggaagagatggatgattga |
28298057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 28514053 - 28514016
Alignment:
| Q |
14 |
cataggagaaggaagaggaggaagagatggatgattga |
51 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28514053 |
cataggagaaggaagaggaggaagagatggatgattga |
28514016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 28226830 - 28226743
Alignment:
| Q |
14 |
cataggagaaggaagaggaggaagagatggatgattgaagcatagcc--atgagagttgagaataaaaaggaagtaagaagagtatga |
99 |
Q |
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|||| ||||||||||| | || ||||| ||||||||||||||||||| |||||| | ||||||| ||||||||||| ||| |||||| |
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| T |
28226830 |
cataagagaaggaagaagggggagagacggatgattgaagcatagccatatgagaatagagaatagaaaggaagtaataagtgtatga |
28226743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 54; Significance: 3e-22; HSPs: 3)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 116676 - 116591
Alignment:
| Q |
14 |
cataggagaaggaagaggaggaagagatggatgattgaagcatagccatgagagttgagaataaaaaggaagtaagaagagtatga |
99 |
Q |
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||||||| |||||||||||||||||||||||||||||||| | |||||||||||| | ||||||| ||||| | |||||||||||| |
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| T |
116676 |
cataggaaaaggaagaggaggaagagatggatgattgaagtagagccatgagagtagtgaataaagaggaaatgagaagagtatga |
116591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 34605 - 34520
Alignment:
| Q |
14 |
cataggagaaggaagaggaggaagagatggatgattgaagcatagccatgagagttgagaataaaaaggaagtaagaagagtatga |
99 |
Q |
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|||||||||| ||||| |||| | || |||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
34605 |
cataggagaaagaagaagagggggggacggatgattgaagcagagccatgagagtagagaacaaaaaggaagtaagaagagtatga |
34520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 27328 - 27241
Alignment:
| Q |
14 |
cataggagaaggaagaggaggaagagatggatgattgaagcatagcc--atgagagttgagaataaaaaggaagtaagaagagtatga |
99 |
Q |
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|||| ||||||||||| | || ||||| ||||||||||||||||||| |||||| | ||||||| ||||||||||| ||| |||||| |
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| T |
27328 |
cataagagaaggaagaagggggagagacggatgattgaagcatagccatatgagaatagagaatagaaaggaagtaataagtgtatga |
27241 |
T |
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