View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10841_low_123 (Length: 218)

Name: NF10841_low_123
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10841_low_123
NF10841_low_123
[»] chr5 (3 HSPs)
chr5 (20-185)||(14417027-14417192)
chr5 (23-185)||(30654775-30654939)
chr5 (56-134)||(1326049-1326125)
[»] chr7 (2 HSPs)
chr7 (23-185)||(25035424-25035586)
chr7 (20-73)||(17710951-17711004)
[»] chr2 (1 HSPs)
chr2 (20-118)||(18815018-18815116)
[»] chr8 (4 HSPs)
chr8 (20-185)||(29386830-29386994)
chr8 (20-101)||(8833827-8833908)
chr8 (70-185)||(7272273-7272388)
chr8 (124-185)||(8834257-8834318)
[»] scaffold0209 (4 HSPs)
scaffold0209 (91-185)||(7464-7558)
scaffold0209 (91-185)||(20918-21012)
scaffold0209 (20-107)||(7564-7651)
scaffold0209 (20-107)||(21018-21105)
[»] chr3 (1 HSPs)
chr3 (20-103)||(20387908-20387992)
[»] chr1 (1 HSPs)
chr1 (64-182)||(33153389-33153513)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 14417027 - 14417192
Alignment:
Q  20 tacattgtatatcattggaaatataaaatgagtacctaccaccctaatttaaacaaatcaaacaagtttaattcaaatgacacacatcgtttgtcaactg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14417027 tacattgtatatcattggaaatataaaatgagtacctaccaccctaatttaaacaaatcaaacaagtttaattcaaatgacacacatcgtttgtcaactg 14417126  T
Q  120 caatgaatctctgaccatccctctagaagagttcatctcccgtgaacttgcagcaaccataagtgc 185  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  14417127 caatgaatctctgaccatccctctagaagagctcatctcccctgaacttgcagcaaccataagtgc 14417192  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 30654939 - 30654775
Alignment:
Q  23 attgtatatcattggaaatataaaatgagtacctaccaccctaatttaaacaaatcaaacaagtttaattcaaatgacacacatcgtttgtcaactgcaa 122  Q
    ||||||||||||||| ||||||||  || || ||||||||||||||||| ||||||||||||||||||||||||||   | |||||||||||||||        
T  30654939 attgtatatcattggtaatataaatcgaatagctaccaccctaatttaagcaaatcaaacaagtttaattcaaatg---cgcatcgtttgtcaactatgt 30654843  T
Q  123 tgaatctctgacc-----atccctctagaagagttcatctcccgtgaacttgcagcaaccataagtgc 185  Q
    ||||| || ||||     | |||||||||| || ||||||||| ||| ||||||||||||||||||||    
T  30654842 tgaatatcggaccagccaagccctctagaaaagctcatctcccctgagcttgcagcaaccataagtgc 30654775  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 1326049 - 1326125
Alignment:
Q  56 taccaccctaatttaaacaaatcaaacaagtttaattcaaatgacacacatcgtttgtcaactgcaatgaatctctgac 134  Q
    |||||||||| ||||| |  |||||||||||||||||||||||  |||| |||| |||||||  || ||||||||||||    
T  1326049 taccaccctagtttaagcctatcaaacaagtttaattcaaatg--acacgtcgtatgtcaaccccagtgaatctctgac 1326125  T

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Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 25035424 - 25035586
Alignment:
Q  23 attgtatatcattggaaatataaaatgagtacctaccaccctaatttaaacaaatcaaacaagtttaattcaaatgacacacatcgtttgtcaactgcaa 122  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||     
T  25035424 attgtatatcattggaaatataaaatgagtagctaccaccctaatttaaacaaatcaaacaagtttaatttaaatgacacacatcgtttatcaactgcac 25035523  T
Q  123 tgaatctctgaccatccctctagaagagttcatctcccgtgaacttgcagcaaccataagtgc 185  Q
    |||||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||    
T  25035524 tgaatctctgaccatccctctagaagagctcatcttccttgaacttgcagcaaccacaagtgc 25035586  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 17710951 - 17711004
Alignment:
Q  20 tacattgtatatcattggaaatataaaatgagtacctaccaccctaatttaaac 73  Q
    |||| |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  17710951 tacaatgtatatcattgaaaatataaaatgagtagctaccaccctaatttaaac 17711004  T

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Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 18815018 - 18815116
Alignment:
Q  20 tacattgtatatcattggaaatataaaatgagtacctaccaccctaatttaaacaaatcaaacaagtttaattcaaatgacacacatcgtttgtcaact 118  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||    
T  18815018 tacaatgtatatcattggaaatataaaatgagtagctaccaccctaatttaagcaaatcaaacaagtttaattcaaatgacacacatccattgtcaact 18815116  T

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Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 29386830 - 29386994
Alignment:
Q  20 tacattgtatatcattggaaatataaaatgagtacctaccaccctaatttaaacaaatcaaacaagtttaattcaaatgacacacatcgtttgtcaactg 119  Q
    |||||||||| |||||||||||| ||| ||||||  |||||| ||||||||| ||||||||||||||| ||||||||||||||||||||  |||||||      
T  29386830 tacattgtatgtcattggaaatacaaattgagtagttaccactctaatttaagcaaatcaaacaagttcaattcaaatgacacacatcgaatgtcaacca 29386929  T
Q  120 caatgaatctctgaccatccctctagaagagttcatctcccgtgaacttgcagcaaccataagtgc 185  Q
     | ||||||||| |||| |||    ||| || ||||||||| | ||||||||||||||||||||||    
T  29386930 tagtgaatctct-accaacccaaacgaaaagctcatctcccttaaacttgcagcaaccataagtgc 29386994  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 8833827 - 8833908
Alignment:
Q  20 tacattgtatatcattggaaatataaaatgagtacctaccaccctaatttaaacaaatcaaacaagtttaattcaaatgaca 101  Q
    |||||| ||||||| |||||||| ||| || |||  |||||||||||||||| |||||||||||||||||||||||||||||    
T  8833827 tacattatatatcaatggaaatacaaattgggtagttaccaccctaatttaagcaaatcaaacaagtttaattcaaatgaca 8833908  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 7272273 - 7272388
Alignment:
Q  70 aaacaaatcaaacaagtttaattcaaatgacacacatcgtttgtcaactgcaatgaatctctgaccatccctctagaagagttcatctcccgtgaacttg 169  Q
    ||||||||||||||||||||||||||||  |||| || || ||||||   |||| ||| |||||||| |    |||||||| |||||| || ||||| ||    
T  7272273 aaacaaatcaaacaagtttaattcaaatttcacatattgtatgtcaaacacaataaatatctgaccaacttgatagaagagctcatctgccatgaacatg 7272372  T
Q  170 cagcaaccataagtgc 185  Q
    |||||||||| |||||    
T  7272373 cagcaaccattagtgc 7272388  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 8834257 - 8834318
Alignment:
Q  124 gaatctctgaccatccctctagaagagttcatctcccgtgaacttgcagcaaccataagtgc 185  Q
    ||||||||||||| ||||  | |||||| |||||||| | ||||||||||||||||||||||    
T  8834257 gaatctctgaccagccctacaaaagagtgcatctcccctaaacttgcagcaaccataagtgc 8834318  T

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Target: scaffold0209 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 7558 - 7464
Alignment:
Q  91 ttcaaatgacacacatcgtttgtcaactgcaatgaatctctgaccatccctctagaagagttcatctcccgtgaacttgcagcaaccataagtgc 185  Q
    ||||||||||||||||||| |||||||  ||  ||||||||||||| ||||  |||||||  | |||||| ||||||||||||||||||||||||    
T  7558 ttcaaatgacacacatcgtatgtcaaccacatcgaatctctgaccagccctagagaagagcacgtctcccttgaacttgcagcaaccataagtgc 7464  T

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Target: scaffold0209; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 21012 - 20918
Alignment:
Q  91 ttcaaatgacacacatcgtttgtcaactgcaatgaatctctgaccatccctctagaagagttcatctcccgtgaacttgcagcaaccataagtgc 185  Q
    ||||||||||||||||||| |||||||  ||  ||||||||||||| ||||  |||||||  | |||||| ||||||||||||||||||||||||    
T  21012 ttcaaatgacacacatcgtatgtcaaccacatcgaatctctgaccagccctagagaagagcacgtctcccttgaacttgcagcaaccataagtgc 20918  T

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Target: scaffold0209; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 7651 - 7564
Alignment:
Q  20 tacattgtatatcattggaaatataaaatgagtacctaccaccctaatttaaacaaatcaaacaagtttaattcaaatgacacacatc 107  Q
    ||||||||||||||||||||||| ||| | | ||  ||||||||||||| || ||||||||| |||||  ||||||||| ||||||||    
T  7651 tacattgtatatcattggaaatacaaattcattagataccaccctaattaaagcaaatcaaaaaagttctattcaaatggcacacatc 7564  T

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Target: scaffold0209; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 21105 - 21018
Alignment:
Q  20 tacattgtatatcattggaaatataaaatgagtacctaccaccctaatttaaacaaatcaaacaagtttaattcaaatgacacacatc 107  Q
    ||||||||||||||||||||||| ||| | | ||  ||||||||||||| || ||||||||| |||||  ||||||||| ||||||||    
T  21105 tacattgtatatcattggaaatacaaattcattagataccaccctaattaaagcaaatcaaaaaagttctattcaaatggcacacatc 21018  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 20387992 - 20387908
Alignment:
Q  20 tacattgtatatcattggaaatataaaatgagtacctaccacccta-atttaaacaaatcaaacaagtttaattcaaatgacaca 103  Q
    |||||||| |||||||| |||||||||||| ||| |||  |||||| ||||||  ||||||||||||||||||||||||||||||    
T  20387992 tacattgtgtatcattgaaaatataaaatgcgtagctaaaaccctatatttaagtaaatcaaacaagtttaattcaaatgacaca 20387908  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 33153513 - 33153389
Alignment:
Q  64 taatttaaacaaatcaaacaagtttaattcaaatgacacacatcgtttgtcaactgcaatgaa----tctctgacca--tccctctagaagagttcatct 157  Q
    |||||||| |||||||||||| |||||||||| ||||||||||  | |||||||| || ||||    || || ||||  || || |||||||| ||||||    
T  33153513 taatttaagcaaatcaaacaaatttaattcaactgacacacattatatgtcaactacagtgaatcattcactaaccagctctctatagaagagctcatct 33153414  T
Q  158 cccgtgaacttgcagcaaccataag 182  Q
    ||| |||||||| ||||||||||||    
T  33153413 cccctgaacttgaagcaaccataag 33153389  T

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