View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_126 (Length: 217)
Name: NF10841_low_126
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_126 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 47382114 - 47381934
Alignment:
| Q |
18 |
gaaaaaaggtggttgagtatcctaaaaatgttggctaatgttactatacaagataaatcttaaattatggcctt-cgttttcaaattcttggttgccaac |
116 |
Q |
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| T |
47382114 |
gaaaaaaggtggttaagtatccttaaaatgttggttaatgtta---tgcaagctaaatcttaaattatggccttaccttttcaaattcttgattgcgaac |
47382018 |
T |
|
| Q |
117 |
attttcatctttctccttaactatctgactaacctccttttcaagccctcttgcttcttcaggtaactgcaagtatataaatcc |
200 |
Q |
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| T |
47382017 |
agcttcatctttctccttaactatctgcctaacctccttttcaagccctcttgcttcttcaggtaactgaaagaatataaatcc |
47381934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 47817617 - 47817434
Alignment:
| Q |
15 |
taggaaaaaaggtggttgagtatcctaaaaatgttggctaatgttactatacaagataaatcttaaattatggcctt-cgttttcaaattcttggttgcc |
113 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||| |||| | ||||||||||||||||||||| | |||||||||||||| | | |
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| T |
47817617 |
taggaaaaaaggtggttaagtatcctaaaaatgttggttaatgtta---tacatgctaaatcttaaattatggccttaccttttcaaattcttgatcacg |
47817521 |
T |
|
| Q |
114 |
aacattttcatctttctccttaactatctgactaacctccttttcaagccctcttgcttcttcaggtaactgcaagtatataaatcc |
200 |
Q |
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|| | |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47817520 |
aatagcttcatctttctccttaactatctgcctaacctctttttcaagccctcttgcttcttcaggtaactgcaagaatataaatcc |
47817434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 40244718 - 40244613
Alignment:
| Q |
94 |
ttttcaaattcttggttgccaacattttcatctttctccttaactatctgactaacctccttttcaagccctcttgcttcttcaggtaactgcaagtata |
193 |
Q |
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||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
40244718 |
ttttcaaattcttggttgcgaacagcttcatctttctcctttactatctgcctaacctccttttcaagacctcttgcctcttcaggtaactgcaagtatg |
40244619 |
T |
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| Q |
194 |
taaatc |
199 |
Q |
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|||||| |
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| T |
40244618 |
taaatc |
40244613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 40244789 - 40244757
Alignment:
| Q |
17 |
ggaaaaaaggtggttgagtatcctaaaaatgtt |
49 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
40244789 |
ggaaagaaggtggttgagtatcctaaaaatgtt |
40244757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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