View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10841_low_127 (Length: 216)
Name: NF10841_low_127
Description: NF10841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10841_low_127 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 32098545 - 32098760
Alignment:
| Q |
1 |
ctagactgattttgtattcttctgtatcggtaggtggctgcacacaaggaagttcttgaaggtgatccctacttgaagcaaagactcagactccgtgatt |
100 |
Q |
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| T |
32098545 |
ctagactgattttgtattcttctgtatcggtaggtggctgcacacaaggaagttcttgaaggtgatccctacttgaagcaaagactcagactccgtgatt |
32098644 |
T |
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| Q |
101 |
cctacattacaacccttaatgttttccaagcctacacattgaaacggatccgcgatccaaactacaaggtggaggtgcgccccccaatctcgaaagagtc |
200 |
Q |
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| T |
32098645 |
cctacattacaacccttaatgttttccaagcctacacattgaaacggatccgcgatccaaactacaaggtggaggtgcgccccccaatctcgaaagagtc |
32098744 |
T |
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| Q |
201 |
tgctgaaacaagtaaa |
216 |
Q |
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|||||||||||||||| |
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| T |
32098745 |
tgctgaaacaagtaaa |
32098760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 22568785 - 22568918
Alignment:
| Q |
31 |
taggtggctgcacacaaggaagttcttgaaggtgatccctacttgaagcaaagactcagactccgtgattcctacattacaacccttaatgttttccaag |
130 |
Q |
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| T |
22568785 |
taggtggctgcgcacaaggatcttcttgagggagacccttacttaaagcaaagactccgcctgcgtgattcatacataactaccttgaatgtgtgccagg |
22568884 |
T |
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| Q |
131 |
cctacacattgaaacggatccgcgatccaaacta |
164 |
Q |
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| T |
22568885 |
cttacacattgaaacgcatccgtgatccaaacta |
22568918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 30905582 - 30905454
Alignment:
| Q |
30 |
gtaggtggctgcacacaaggaagttcttgaaggtgatccctacttgaagcaaagactcagactccgtgattcctacattacaacccttaatgttttccaa |
129 |
Q |
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|||||| |||| |||||| || | |||||||| || || |||||||||||||||||| | || |||||||| ||||| |||||||| ||||| || ||| |
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| T |
30905582 |
gtaggttgctggacacaaagatatccttgaaggagacccttacttgaagcaaagactccgtcttcgtgattcatacatcacaaccctcaatgtcttgcaa |
30905483 |
T |
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| Q |
130 |
gcctacacattgaaacggatccgcgatcc |
158 |
Q |
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| T |
30905482 |
gcctacacactgaagcgaatccgtgatcc |
30905454 |
T |
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